Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.2e-158 563.1 288 100.0
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 5.1e-101 371.7 263 73.8
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 2.4e-90 336.3 265 71.7
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.7e-88 330.1 257 68.1
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.1e-82 310.8 270 61.9
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 6.9e-82 308.1 262 63.7
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 6.5e-80 301.6 270 63.7
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 3.2e-79 299.3 260 61.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 1.1e-76 290.8 251 61.4
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 1.3e-75 287.3 268 60.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 1.3e-75 287.3 263 58.9
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 1.6e-75 287.0 255 58.0
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.2e-75 286.6 263 58.6
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 2.2e-75 286.6 351 49.3
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 2.8e-75 286.2 260 58.5
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 3.7e-75 285.8 263 60.8
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.1e-74 284.3 253 63.6
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 1.4e-74 283.9 262 58.4
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.8e-74 283.5 210 68.1
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 4.1e-74 282.3 263 59.3
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 4.1e-74 282.3 255 56.1
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 5.3e-74 282.0 260 57.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 6.9e-74 281.6 202 69.3
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 6.9e-74 281.6 261 58.2
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 6.9e-74 281.6 256 59.0
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 6.9e-74 281.6 256 59.0
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 1.2e-73 280.8 253 59.7
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 1.2e-73 280.8 255 55.7
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 1.2e-73 280.8 259 57.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.6e-73 279.6 256 58.6
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 7.7e-73 278.1 269 56.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 7.7e-73 278.1 268 56.0
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 2.9e-72 276.2 266 59.4
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.8e-72 275.8 272 58.8
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.2e-70 270.8 254 60.2
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 1.6e-70 270.4 267 56.2
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 2.1e-70 270.0 266 59.4
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 6.1e-70 268.5 209 70.3
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 1.4e-69 267.3 252 57.1
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 3.9e-69 265.8 254 59.4
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.9e-69 265.8 252 56.7
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 3.9e-69 265.8 269 56.1
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 8.8e-69 264.6 262 54.6
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 8.8e-69 264.6 266 56.4
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 1.5e-68 263.8 258 57.0
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 1.5e-68 263.8 203 71.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 2.0e-68 263.5 252 56.3
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 2.6e-68 263.1 261 54.4
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 2.6e-68 263.1 214 63.1
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 7.4e-68 261.5 257 54.5
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 7.4e-68 261.5 273 59.0
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.3e-67 260.8 261 53.3
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.2e-67 260.0 253 56.5
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.2e-67 260.0 253 56.5
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 3.7e-67 259.2 265 54.3
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.8e-67 258.8 212 63.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.8e-67 258.8 199 65.8
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 8.2e-67 258.1 212 62.7
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 1.8e-66 256.9 249 54.6
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 3.1e-66 256.1 212 62.7
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 6.9e-66 255.0 257 56.0
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 9.1e-66 254.6 251 55.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 9.1e-66 254.6 197 66.5
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 1.2e-65 254.2 266 56.0
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 1.2e-65 254.2 251 54.2
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 1.5e-65 253.8 254 55.5
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 2.0e-65 253.4 266 55.6
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 2.0e-65 253.4 252 55.2
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.6e-65 253.1 259 55.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.6e-65 253.1 256 54.3
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 4.5e-65 252.3 261 54.0
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 1.0e-64 251.1 264 53.4
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 1.0e-64 251.1 253 54.9
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.7e-64 250.4 264 52.7
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 2.2e-64 250.0 264 51.5
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 2.9e-64 249.6 262 53.4
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 6.1e-62 241.9 208 61.5
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 7.9e-62 241.5 272 51.5
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 1.8e-61 240.4 260 50.8
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 1.8e-61 240.4 260 50.8
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 3.9e-61 239.2 260 50.4
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 1.1e-60 237.7 264 51.1
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 1.1e-60 237.7 214 57.5
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 2.0e-60 236.9 272 50.4
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 2.6e-60 236.5 262 51.1
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 1.3e-59 234.2 255 51.0
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 1.3e-59 234.2 300 51.7
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 6.3e-59 231.9 262 53.4
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.1e-58 231.1 268 47.8
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 2.4e-58 229.9 252 52.8
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.6e-57 226.5 212 56.1
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 1.0e-56 224.6 205 60.5
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 2.1e-54 216.9 258 48.8
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 4.7e-54 215.7 250 50.4
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 6.1e-54 215.3 259 49.8
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 1.4e-53 214.2 258 48.4
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 7.5e-52 208.4 212 54.2
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 2.2e-51 206.8 256 46.9
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 8.2e-51 204.9 266 47.4
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 8.2e-51 204.9 174 61.5
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 9.1e-50 201.4 339 39.5
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 1.7e-48 197.2 252 46.8
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 1.7e-48 197.2 252 46.8
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 2.9e-48 196.4 252 46.8
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 2.5e-47 193.4 192 53.1
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 2.5e-47 193.4 252 46.4
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 2.5e-47 193.4 252 46.4
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 9.4e-47 191.4 244 43.4
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.6e-46 190.7 204 52.0
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 6.8e-45 185.3 204 50.5
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 2.6e-44 183.3 166 54.8
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 9.8e-44 181.4 251 45.4
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.1e-42 177.9 194 46.4
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.4e-42 177.6 252 42.5
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.4e-42 176.8 254 50.4
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.0e-40 171.4 194 43.3
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.7e-40 170.6 192 46.4
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 1.8e-37 160.6 183 47.5
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 2.6e-36 156.8 188 51.6
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 2.8e-35 153.3 108 65.7
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.4e-34 151.0 158 54.4
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 1.4e-29 134.4 163 46.0
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 4.0e-29 132.9 234 37.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 8.9e-29 131.7 95 58.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.5e-23 114.4 149 47.7
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.6e-20 103.6 222 33.8
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.9e-19 100.1 88 59.1
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 7.0e-18 95.5 144 36.8
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 3.2e-10 70.1 225 26.2
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.7e-09 67.0 38 73.7
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 3.5e-09 66.6 66 51.5


User provided reference genes

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