Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1847.0 943 100.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1495.3 936 82.3
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1483.8 941 81.2
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1476.1 936 81.1
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1473.4 938 80.5
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1460.3 936 80.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1454.5 936 79.5
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1439.9 1012 75.1
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1432.5 936 79.1
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1431.8 936 79.4
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1430.2 936 79.1
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1426.8 936 77.6
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1426.4 916 79.7
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1426.4 936 79.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1426.0 936 78.0
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1418.7 936 79.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1418.7 940 78.6
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1406.0 936 78.0
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1397.9 937 77.2
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1392.9 936 76.6
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1392.9 936 76.6
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1388.6 937 76.7
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1386.3 937 76.6
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1385.2 937 77.2
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1381.7 1145 65.8
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1380.5 938 75.7
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1376.7 956 75.3
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1376.3 936 76.7
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1374.0 965 74.1
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1366.3 936 75.0
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1364.0 936 74.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1362.8 942 75.5
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1361.7 944 75.5
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1359.4 935 75.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1357.8 940 75.4
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1354.3 936 75.5
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1352.8 942 75.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1349.0 980 71.8
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1345.5 938 75.2
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1344.7 936 74.9
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1340.1 938 74.7
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1340.1 953 74.9
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1336.2 941 74.7
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1331.6 938 74.6
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1330.5 936 73.5
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1330.1 943 74.1
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1328.9 938 74.0
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1328.5 937 73.4
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1325.8 948 72.6
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1323.5 940 72.9
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1322.8 947 73.9
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1320.1 937 73.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1319.7 936 73.2
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1319.3 946 73.6
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1315.4 934 72.8
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1313.9 936 72.6
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1311.2 924 73.9
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1308.9 954 71.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1308.5 934 72.7
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1307.0 937 72.4
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1306.2 937 72.5
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1305.8 965 70.9
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1303.1 915 74.6
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1298.9 936 71.9
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1297.7 936 71.5
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1297.0 941 72.5
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1295.0 940 72.2
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1286.9 937 71.9
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1280.8 937 72.0
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1280.8 937 71.8
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1278.8 940 71.2
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1272.7 942 70.3
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1270.8 939 70.6
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1267.7 936 70.2
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1266.1 945 69.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1265.4 936 69.3
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1264.6 895 76.2
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1263.1 936 69.3
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1261.5 936 70.1
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1260.0 936 69.7
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1259.2 947 69.4
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1258.0 938 69.4
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1257.3 937 69.2
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1249.6 1077 63.7
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1249.2 938 69.6
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1248.4 958 67.7
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1242.3 954 67.7
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1237.6 936 70.8
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1209.1 862 72.5
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1209.1 936 67.2
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1206.8 946 66.4
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1195.6 944 66.9
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1191.4 945 66.5
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1182.5 1002 63.0
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1176.0 936 65.2
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1171.0 815 74.7
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1169.5 936 65.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1157.9 916 68.3
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1150.6 936 63.9
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1123.6 942 63.8
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1118.2 762 77.2
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1114.4 759 76.5
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1107.4 942 63.5
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1102.0 744 76.9
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1096.3 957 61.8
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1092.4 935 60.5
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 9.7e-311 1070.1 936 60.7
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 9.7e-311 1070.1 936 60.7
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 1.7e-310 1069.3 936 61.1
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 7.0e-309 1063.9 936 60.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 4.6e-308 1061.2 936 60.4
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 4.0e-304 1048.1 936 60.0
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.2e-295 1020.0 765 70.5
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 7.6e-287 990.7 963 56.8
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.8e-280 969.5 1043 53.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 5.1e-275 951.4 971 57.0
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 3.7e-249 865.5 608 73.7
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 7.4e-242 841.3 965 50.9
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.3e-241 840.5 536 79.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 7.7e-239 831.2 571 76.2
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.4e-237 827.0 981 49.3
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 3.1e-232 809.3 988 49.6
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 2.6e-231 806.2 946 50.0
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 2.6e-226 789.6 1006 47.6
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.2e-215 754.2 518 73.0
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 1.8e-208 730.3 853 51.8
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 8.1e-188 661.8 573 62.5
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.3e-187 660.2 1181 38.4
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.2e-159 568.2 363 77.7
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 3.2e-152 543.5 346 80.6
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.7e-149 532.7 508 60.2
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 5.0e-129 466.5 328 75.0
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.5e-125 454.9 324 73.5
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 8.5e-121 439.1 348 69.0
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 4.2e-120 436.8 420 61.2
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.2e-61 242.7 167 76.6
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.1e-51 209.5 206 58.3
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 2.4e-46 191.8 126 81.7
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.0e-41 176.4 115 79.1
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.8e-41 175.6 179 52.0
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 4.3e-40 171.0 127 73.2
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.8e-36 157.9 183 48.6
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 5.5e-35 154.1 93 86.0
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 1.6e-34 152.5 140 62.1
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 9.6e-32 143.3 128 58.6
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.6e-29 135.2 92 71.7
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.3e-25 122.9 102 60.8
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.2e-23 115.5 133 50.4
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.9e-19 102.4 60 76.7
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 7.2e-19 100.5 60 75.0
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 7.2e-19 100.5 60 75.0
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 3.6e-18 98.2 60 73.3
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 4.6e-18 97.8 58 74.1
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 1.0e-17 96.7 80 62.5
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 4.2e-11 74.7 92 51.1
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 2.6e-08 65.5 32 96.9
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 8.2e-07 60.5 48 64.6


User provided reference genes

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