Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.1e-98 363.2 175 100.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.1e-93 346.7 175 95.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.1e-93 346.7 175 93.1
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.1e-93 346.7 174 95.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.8e-93 345.9 174 94.8
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 3.1e-93 345.1 175 94.3
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 3.1e-93 345.1 175 92.6
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.1e-93 345.1 175 94.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 5.3e-93 344.4 175 92.6
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.9e-93 344.0 175 93.7
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 2.0e-92 342.4 175 93.1
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 92.0
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 92.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 5.8e-92 340.9 175 93.7
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 5.8e-92 340.9 175 93.1
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 7.6e-92 340.5 174 93.7
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 93.1
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 93.1
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.9e-91 338.6 175 92.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 92.6
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.8e-91 338.2 173 93.1
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 3.8e-91 338.2 172 92.4
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 92.0
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 6.5e-91 337.4 174 92.5
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.9e-90 335.9 175 90.9
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.9e-90 335.9 175 90.9
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.9e-90 335.9 172 92.4
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.5e-90 335.5 172 93.6
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 90.9
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 91.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 4.2e-90 334.7 174 91.4
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 5.5e-90 334.3 172 90.7
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.1e-90 334.0 175 90.3
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 9.3e-90 333.6 172 91.9
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.6e-89 332.8 175 90.9
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 2.1e-89 332.4 173 90.8
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 2.7e-89 332.0 172 90.1
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.7e-89 332.0 172 92.4
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.5e-89 331.6 174 92.0
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.5e-89 331.6 174 92.0
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 6.1e-89 330.9 173 89.6
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.1e-89 330.9 174 91.4
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 6.1e-89 330.9 173 91.3
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 6.1e-89 330.9 172 90.7
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.8e-88 329.3 172 91.9
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.8e-88 329.3 175 90.3
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-88 328.9 174 91.4
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 89.0
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 89.0
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 3.0e-88 328.6 174 89.1
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 3.0e-88 328.6 175 89.1
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 6.7e-88 327.4 172 89.5
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 88.4
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.7e-88 327.0 174 87.9
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 8.7e-88 327.0 172 89.5
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 8.7e-88 327.0 174 89.1
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 88.6
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.9e-87 325.9 175 88.0
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.9e-87 325.9 172 89.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.5e-87 325.5 174 89.7
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 87.4
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 88.4
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 175 86.9
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 4.3e-87 324.7 171 89.5
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 88.4
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 4.3e-87 324.7 171 88.9
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 9.7e-87 323.6 226 73.5
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 87.3
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 87.3
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.6e-86 322.8 172 87.8
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 88.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.2e-86 322.4 175 86.3
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 2.8e-86 322.0 175 85.7
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 6.3e-86 320.9 172 87.2
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 6.3e-86 320.9 172 87.2
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 8.2e-86 320.5 174 88.5
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 88.0
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.4e-85 319.7 172 86.6
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 87.2
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 86.3
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 87.2
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 86.9
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.5e-84 316.2 175 88.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.4e-84 315.1 172 85.5
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.0e-83 313.5 190 80.5
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 86.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 8.5e-83 310.5 159 92.5
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 8.5e-83 310.5 181 83.4
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 8.5e-83 310.5 173 83.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 83.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 83.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 83.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 83.7
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.2e-81 306.6 171 83.6
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.6e-81 306.2 172 83.1
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.7e-81 305.4 171 83.0
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 3.9e-80 301.6 173 82.7
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.3e-79 298.1 158 91.8
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.3e-78 296.6 165 84.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.1e-73 279.3 149 91.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.0e-72 275.4 151 86.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.2e-70 269.2 146 88.4
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 6.3e-70 267.7 174 70.7
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.4e-69 266.5 176 71.6
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.0e-67 260.4 138 90.6
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 5.0e-67 258.1 174 66.1
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.5e-66 255.8 174 66.7
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 8.0e-65 250.8 147 83.0
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 8.0e-65 250.8 182 69.2
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.9e-64 248.4 126 93.7
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.5e-63 246.5 127 90.6
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.4e-63 245.0 134 89.6
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.7e-63 244.6 172 72.7
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.8e-62 241.5 130 89.2
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.1e-61 240.4 130 87.7
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.1e-61 240.4 130 87.7
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.6e-60 236.5 127 86.6
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.6e-60 236.5 128 87.5
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 2.0e-60 236.1 133 84.2
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 8.5e-59 230.7 129 86.0
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 8.5e-59 230.7 127 84.3
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.1e-58 230.3 176 63.6
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-57 226.9 163 73.0
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.4e-53 213.4 126 82.5
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.9e-51 205.7 132 75.0
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 2.5e-50 202.6 128 78.9
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.3e-46 190.3 130 70.0
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 8.3e-46 187.6 131 73.3
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-40 170.6 92 90.2
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.6e-39 166.0 96 85.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-38 163.3 91 87.9
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.2e-37 157.5 92 84.8
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-36 156.8 95 83.2
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-36 156.0 107 77.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.9e-36 154.8 80 88.8
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-35 154.1 104 75.0
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-35 152.9 95 78.9
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.3e-35 152.9 93 77.4
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 9.5e-34 147.5 88 79.5
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 9.8e-31 137.5 75 88.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.2e-28 130.6 99 65.7
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.6e-28 130.2 80 78.8
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-28 129.8 77 83.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 3.0e-27 125.9 192 35.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.6e-25 120.2 67 77.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.7e-22 110.2 90 63.3
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.6e-20 103.6 57 86.0
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 9.2e-13 77.8 37 86.5


User provided reference genes

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