Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 2.5e-228 795.0 385 100.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 7.4e-172 607.4 377 77.5
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 7.4e-172 607.4 377 77.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 4.5e-153 545.0 385 68.1
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.4e-151 540.0 383 69.5
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.5e-148 530.0 413 65.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.4e-146 522.7 383 67.6
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 7.7e-145 517.7 384 68.8
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.9e-144 515.8 377 65.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.9e-143 513.1 384 66.4
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 9.4e-143 510.8 397 63.5
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.8e-141 506.5 400 61.0
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.8e-141 504.2 386 64.8
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 5.7e-140 501.5 383 64.2
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.4e-138 496.9 381 64.6
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 4.1e-138 495.4 402 62.7
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 5.3e-138 495.0 396 59.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.7e-136 490.0 383 64.2
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.9e-136 489.2 401 61.1
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.0e-136 488.4 405 61.7
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 8.5e-136 487.6 383 63.4
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.5e-135 486.1 385 62.6
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.2e-135 484.6 380 62.1
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.2e-134 483.8 408 59.6
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.2e-134 483.8 427 58.8
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 6.1e-134 481.5 409 60.1
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.0e-133 480.7 408 59.6
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.0e-133 479.2 385 61.3
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 4.0e-133 478.8 384 62.5
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.7e-133 478.0 385 61.8
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.2e-132 477.2 385 61.8
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 4.4e-132 475.3 383 59.3
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.8e-131 472.6 375 62.7
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.6e-129 466.8 383 62.1
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 4.5e-129 465.3 412 57.8
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.2e-128 463.0 384 58.6
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 2.9e-128 462.6 390 59.0
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.8e-128 462.2 408 57.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 5.0e-128 461.8 315 69.5
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 6.5e-128 461.5 366 61.5
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 6.5e-128 461.5 384 58.9
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.1e-127 460.7 394 58.6
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.5e-127 459.5 421 57.5
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.2e-127 459.1 326 66.3
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.2e-127 458.8 373 62.5
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 4.2e-127 458.8 376 59.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 5.5e-127 458.4 384 59.1
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.1e-126 456.4 398 57.0
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.1e-126 456.4 378 59.8
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 2.7e-126 456.1 394 57.4
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.6e-126 455.7 314 68.5
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-125 453.8 395 56.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.3e-125 453.0 384 59.1
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.0e-125 452.2 404 55.7
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.2e-124 450.7 384 58.1
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.4e-124 448.7 384 58.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 9.8e-124 447.6 398 56.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.7e-123 446.8 391 56.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.7e-123 446.8 396 54.8
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.1e-122 442.6 380 58.4
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 3.1e-122 442.6 416 54.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 7.0e-122 441.4 321 65.4
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 7.0e-122 441.4 384 56.2
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 9.1e-122 441.0 333 64.9
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.0e-121 439.9 383 55.6
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.0e-120 437.6 368 57.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 9.5e-119 431.0 386 56.5
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 2.1e-118 429.9 319 64.6
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 8.0e-118 427.9 413 53.3
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 5.2e-117 425.2 383 55.4
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.2e-117 425.2 324 63.3
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 2.0e-116 423.3 335 60.3
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 7.5e-116 421.4 325 62.2
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.3e-115 418.3 325 61.8
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.1e-114 417.5 406 52.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.4e-114 417.2 433 51.7
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.4e-114 417.2 386 55.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 9.2e-114 414.5 413 52.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 7.8e-113 411.4 322 61.2
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.1e-111 407.5 374 55.9
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.5e-111 407.1 322 61.2
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.5e-111 407.1 322 61.2
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.9e-111 406.8 318 61.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.3e-111 406.0 321 61.4
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 1.2e-110 404.1 315 59.7
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-110 404.1 319 61.1
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.8e-110 402.9 325 58.8
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 6.1e-110 401.7 402 50.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.4e-109 400.6 321 58.6
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.8e-109 400.2 319 58.3
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.0e-109 399.4 318 58.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.2e-108 397.5 383 53.3
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 5.7e-108 395.2 381 52.2
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.7e-107 393.7 431 49.2
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.2e-107 393.3 317 60.3
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.9e-107 392.1 336 58.0
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.4e-107 391.7 382 53.4
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.4e-107 391.7 374 54.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 8.3e-107 391.3 325 57.5
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.3e-107 391.3 315 60.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 7.0e-106 388.3 317 58.7
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.4e-101 374.0 390 52.1
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 3.1e-101 372.9 314 55.7
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 6.8e-101 371.7 327 54.7
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.9e-101 371.3 323 55.7
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 7.5e-100 368.2 307 57.3
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.7e-97 359.8 391 50.6
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.6e-97 359.0 387 49.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.3e-96 357.5 389 48.8
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.0e-96 356.3 389 48.6
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.0e-96 356.3 389 48.6
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.2e-94 350.9 399 46.4
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 4.7e-94 349.0 313 52.1
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.2e-93 345.5 242 71.9
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.8e-92 342.0 245 65.7
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.2e-90 334.7 391 47.8
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.2e-89 334.3 322 53.1
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.6e-89 334.0 318 54.4
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 7.8e-89 331.6 394 46.7
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.0e-88 329.7 323 50.8
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.9e-88 329.3 332 49.4
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 6.6e-80 302.0 382 45.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 9.0e-77 291.6 332 46.7
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.7e-72 275.0 355 44.2
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 3.3e-71 273.1 252 55.2
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.6e-70 270.8 317 42.6
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.0e-69 265.0 322 44.1
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.6e-68 263.5 376 40.2
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 7.6e-68 261.9 320 42.8
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.1e-66 258.1 258 52.3
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.6e-62 244.2 215 55.8
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.6e-62 244.2 250 49.2
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 6.2e-62 242.3 170 65.9
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.4e-61 240.4 215 54.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 9.0e-61 238.4 212 53.8
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 6.7e-56 222.2 258 42.2
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 8.2e-46 188.7 188 53.2
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.2e-44 184.9 150 61.3
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 8.5e-43 178.7 127 66.9
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.9e-39 167.5 331 32.0
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.3e-38 164.9 389 31.6
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 2.9e-35 153.7 119 63.9
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.2e-34 149.8 327 33.0
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.1e-33 147.5 135 57.8
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.8e-30 137.1 151 47.7
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.2e-30 135.6 151 47.0
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.4e-29 134.0 86 68.6
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 7.7e-28 129.0 93 61.3
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.5e-26 122.9 159 45.3
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 9.7e-23 112.1 70 70.0
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 1.7e-22 111.3 218 36.2
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 6.3e-22 109.4 87 62.1
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.1e-21 108.6 168 37.5
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.4e-21 108.2 114 50.9
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.4e-21 107.5 441 22.9
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 5.3e-21 106.3 365 25.5
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 6.5e-19 99.4 72 69.4
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.5e-15 88.2 69 58.0
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 2.0e-15 87.8 87 48.3
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 5.7e-15 86.3 76 53.9
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 2.4e-13 80.9 90 45.6
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 1.0e-11 75.5 88 44.3
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 8.5e-11 72.4 74 44.6
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.3e-08 64.3 249 26.1
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.0e-08 63.5 215 29.3
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 5.2e-08 63.2 41 65.9
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 2.0e-07 61.2 327 24.2
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 2.6e-07 60.8 263 26.2
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 4.4e-07 60.1 285 23.2
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 4.4e-07 60.1 254 25.2
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 9.8e-07 58.9 329 22.8
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 1.3e-06 58.5 309 23.0
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 2.2e-06 57.8 336 24.1
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 2.2e-06 57.8 336 24.1
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.3e-06 55.8 275 24.4
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 8.3e-06 55.8 121 31.4
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 8.3e-06 55.8 123 32.5


User provided reference genes

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