Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41387 Davidia involucrata HOM05D002136 ORTHO05D002145 3.6e-147 525.8 497 100.0
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 4.5e-89 332.8 485 68.7
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 4.5e-89 332.8 485 68.7
Cc06_g15140 Coffea canephora HOM05D002136 ORTHO05D002145 5.8e-52 209.5 490 59.0
Prupe.7G261500 Prunus persica HOM05D002136 ORTHO05D002145 1.6e-41 174.9 500 37.8
Oeu021272.1 Olea europaea HOM05D002136 ORTHO05D002145 3.3e-39 167.2 491 35.2
TWI34G1274 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 6.9e-37 159.5 493 46.0
Manes.06G036600 Manihot esculenta HOM05D002136 ORTHO05D002145 1.2e-36 158.7 479 41.5
Manes.14G112628 Manihot esculenta HOM05D002136 ORTHO05D002145 2.2e-35 154.5 490 39.0
Duzib150G0547 Durio zibethinus HOM05D002136 ORTHO05D002145 6.4e-35 152.9 494 46.4
MD15G1153100 Malus domestica HOM05D002136 ORTHO05D002145 8.4e-35 152.5 515 46.0
TWI63G0145 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 8.4e-35 152.5 484 48.3
Nitab4.5_0005188g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.9e-34 151.4 492 28.5
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 2.1e-33 147.9 523 36.1
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 2.7e-33 147.5 447 40.7
Peaxi162Scf00252g00119 Petunia axillaris HOM05D002136 ORTHO05D002145 1.3e-32 145.2 487 35.3
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 6.6e-32 142.9 191 57.6
Potri.018G108200 Populus trichocarpa HOM05D002136 ORTHO05D002145 2.5e-31 141.0 540 43.7
Cpa.g.sc46.142 Carica papaya HOM05D002136 ORTHO05D002145 2.1e-30 137.9 513 46.8
DCAR_014814 Daucus carota HOM05D002136 ORTHO05D002145 2.8e-30 137.5 184 49.5
Potri.006G185700 Populus trichocarpa HOM05D002136 ORTHO05D002145 3.6e-30 137.1 540 32.6
MSTRG.26283 Avicennia marina HOM05D002136 ORTHO05D002145 1.4e-29 135.2 491 28.9
Glyma.02G203100 Glycine max HOM05D002136 ORTHO05D002145 1.2e-28 132.1 505 28.7
Glyma.17G074600 Glycine max HOM05D002136 ORTHO05D002145 1.5e-28 131.7 505 30.5
Duzib187G1505 Durio zibethinus HOM05D002136 ORTHO05D002145 3.8e-27 127.1 504 43.1
Sabra06G0141000 Salix brachista HOM05D002136 ORTHO05D002145 3.8e-27 127.1 556 33.3
Lj9C716T6 Lonicera japonica HOM05D002136 ORTHO05D002145 8.4e-27 125.9 183 51.9
Lalb_Chr07g0179811 Lupinus albus HOM05D002136 ORTHO05D002145 8.4e-27 125.9 497 32.2
TAR636G1536 Trochodendron aralioides HOM05D002136 ORTHO05D002145 5.4e-26 123.2 503 53.3
Cfa020837 Carpinus fangiana HOM05D002136 ORTHO05D002145 2.1e-25 121.3 533 33.0
Phvul.005G040700 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 2.7e-25 120.9 490 29.8
TAR625G1124 Trochodendron aralioides HOM05D002136 ORTHO05D002145 1.8e-24 118.2 120 59.2
CiPaw.16G113900 Carya illinoinensis HOM05D002136 ORTHO05D002145 3.9e-24 117.1 495 42.4
arahy.Tifrunner.gnm1.ann1.D8DRS0 Arachis hypogaea HOM05D002136 ORTHO05D002145 6.7e-24 116.3 524 26.1
Migut.K00334 Erythranthe guttata HOM05D002136 ORTHO05D002145 6.7e-24 116.3 482 30.9
Gohir.A05G052200 Gossypium hirsutum HOM05D002136 ORTHO05D002145 6.7e-24 116.3 505 35.0
Eucgr.C00355 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.1e-23 115.5 511 26.6
Haze_19220 Corylus avellana HOM05D002136 ORTHO05D002145 1.5e-23 115.2 132 51.5
Aqoxy7G03429 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 1.9e-23 114.8 477 29.6
Gohir.A06G096900 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.9e-23 114.8 481 30.4
Thecc.09G032000 Theobroma cacao HOM05D002136 ORTHO05D002145 1.9e-23 114.8 532 39.3
arahy.Tifrunner.gnm1.ann1.CL36ZV Arachis hypogaea HOM05D002136 ORTHO05D002145 3.3e-23 114.0 524 25.8
Gorai.010G112500 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.3e-22 112.1 488 27.9
Lj6g0008983 Lotus japonicus HOM05D002136 ORTHO05D002145 2.8e-22 110.9 546 29.3
Hma1.2p1_1764F.1_g301410 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 1.4e-21 108.6 120 52.5
DCAR_019386 Daucus carota HOM05D002136 ORTHO05D002145 2.4e-21 107.8 478 26.8
Sabra18G0091800 Salix brachista HOM05D002136 ORTHO05D002145 2.4e-21 107.8 564 41.3
Duzib168G2318 Durio zibethinus HOM05D002136 ORTHO05D002145 3.1e-21 107.5 515 43.7
Gohir.D06G097400 Gossypium hirsutum HOM05D002136 ORTHO05D002145 3.1e-21 107.5 488 28.1
Gorai.009G055500 Gossypium raimondii HOM05D002136 ORTHO05D002145 4.0e-21 107.1 504 33.9
FAN26G0651 Fragaria x ananassa HOM05D002136 ORTHO05D002145 7.6e-20 102.8 517 31.5
Dinv11366 Davidia involucrata HOM05D002136 ORTHO05D002145 1.3e-19 102.1 54 94.4
Ca_05791_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 3.8e-19 100.5 511 30.5
SalBow1G7717 Salvia bowleyana HOM05D002136 ORTHO05D002145 3.8e-19 100.5 121 49.6
Gohir.D13G190800 Gossypium hirsutum HOM05D002136 ORTHO05D002145 4.9e-19 100.1 478 25.9
Phvul.009G206800 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 4.9e-19 100.1 498 26.7
CAN.G551.37 Capsicum annuum HOM05D002136 ORTHO05D002145 1.1e-18 99.0 183 40.4
Lj7P457T37 Lonicera japonica HOM05D002136 ORTHO05D002145 1.1e-18 99.0 188 38.3
FAN23G0309 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.9e-18 98.2 529 31.4
Nitab4.5_0006527g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.9e-18 98.2 484 26.4
MBI14_g24800_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 2.4e-18 97.8 187 44.4
CiPaw.15G175400 Carya illinoinensis HOM05D002136 ORTHO05D002145 4.2e-18 97.1 114 49.1
FAN28G0826 Fragaria x ananassa HOM05D002136 ORTHO05D002145 4.2e-18 97.1 523 31.5
ClCG06G012320 Citrullus lanatus HOM05D002136 ORTHO05D002145 7.1e-18 96.3 472 30.9
Ciclev10028046m.g Citrus clementina HOM05D002136 ORTHO05D002145 9.3e-18 95.9 516 27.7
COL.COLO4_18794 Corchorus olitorius HOM05D002136 ORTHO05D002145 1.2e-17 95.5 132 47.7
CANSAT11G0512 Cannabis sativa HOM05D002136 ORTHO05D002145 2.7e-17 94.4 522 27.6
FvH4_1g01050 Fragaria vesca HOM05D002136 ORTHO05D002145 2.7e-17 94.4 539 28.6
Gohir.D05G053700 Gossypium hirsutum HOM05D002136 ORTHO05D002145 2.7e-17 94.4 504 33.1
FAN19G2520 Fragaria x ananassa HOM05D002136 ORTHO05D002145 4.6e-17 93.6 535 31.0
MELO3C010233.2 Cucumis melo HOM05D002136 ORTHO05D002145 6.0e-17 93.2 116 50.9
MSTRG.6123 Avicennia marina HOM05D002136 ORTHO05D002145 7.9e-17 92.8 478 28.5
RcHm_v2.0_Chr2g0085811 Rosa chinensis HOM05D002136 ORTHO05D002145 7.9e-17 92.8 251 38.6
Atru.chr7.100 Acer truncatum HOM05D002136 ORTHO05D002145 1.0e-16 92.4 532 27.4
Gohir.A13G184451 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.0e-16 92.4 508 27.6
Nn8g39864 Nelumbo nucifera HOM05D002136 ORTHO05D002145 3.0e-16 90.9 113 50.4
QL02p093024 Quercus lobata HOM05D002136 ORTHO05D002145 5.1e-16 90.1 98 55.1
CsaV3_1G028840 Cucumis sativus L. HOM05D002136 ORTHO05D002145 6.7e-16 89.7 116 48.3
Nitab4.5_0002315g0120 Nicotiana tabacum HOM05D002136 ORTHO05D002145 6.7e-16 89.7 123 50.4
PGSC0003DMG400011178 Solanum tuberosum HOM05D002136 ORTHO05D002145 6.7e-16 89.7 68 64.7
Nitab4.5_0001478g0030 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.9e-15 88.2 124 49.2
PGSC0003DMG400007900 Solanum tuberosum HOM05D002136 ORTHO05D002145 4.3e-15 87.0 488 45.5
Gorai.013G216600 Gossypium raimondii HOM05D002136 ORTHO05D002145 2.1e-14 84.7 511 27.8
Psat1g021960 Pisum sativum HOM05D002136 ORTHO05D002145 2.1e-14 84.7 68 58.8
TPR.G31935 Trifolium pratense HOM05D002136 ORTHO05D002145 2.1e-14 84.7 68 63.2
AUR62039745 Chenopodium quinoa HOM05D002136 ORTHO05D002145 2.8e-14 84.3 66 65.2
Peaxi162Scf00062g00314 Petunia axillaris HOM05D002136 ORTHO05D002145 2.8e-14 84.3 489 27.2
Lsat_1_v5_gn_8_61721 Lactuca sativa HOM05D002136 ORTHO05D002145 3.7e-14 84.0 484 25.6
HanXRQChr05g0148671 Helianthus annuus HOM05D002136 ORTHO05D002145 6.2e-14 83.2 462 26.0
Nn1g06026 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.1e-13 82.4 56 66.1
Glyma.06G221600 Glycine max HOM05D002136 ORTHO05D002145 1.4e-13 82.0 123 44.7
CSS0000642 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.1e-13 80.9 68 64.7
Lalb_Chr08g0234111 Lupinus albus HOM05D002136 ORTHO05D002145 6.9e-13 79.7 208 29.3
Medtr2g460800 Medicago truncatula HOM05D002136 ORTHO05D002145 6.9e-13 79.7 229 34.1
PGR102G1057 Punica granatum HOM05D002136 ORTHO05D002145 1.2e-12 79.0 67 61.2
EL10Ac8g18853 Beta vulgaris HOM05D002136 ORTHO05D002145 1.5e-12 78.6 66 59.1
BolC9t57832H Brassica oleracea HOM05D002136 ORTHO05D002145 1.5e-12 78.6 200 32.0
Lalb_Chr11g0072721 Lupinus albus HOM05D002136 ORTHO05D002145 1.5e-12 78.6 213 34.3
Solyc12g010120.2 Solanum lycopersicum HOM05D002136 ORTHO05D002145 1.5e-12 78.6 74 60.8
Sopen12g005000 Solanum pennellii HOM05D002136 ORTHO05D002145 1.5e-12 78.6 61 68.9
AUR62043252 Chenopodium quinoa HOM05D002136 ORTHO05D002145 4.5e-12 77.0 46 78.3
VMungo1080G0769 Vigna mungo HOM05D002136 ORTHO05D002145 4.5e-12 77.0 467 25.1
ATR0739G045 Amborella trichopoda HOM05D002136 ORTHO05D002145 5.8e-12 76.6 57 61.4
Thhalv10013006m.g Eutrema salsugineum HOM05D002136 ORTHO05D002145 5.8e-12 76.6 180 40.0
CDE12G0918 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 7.6e-12 76.3 179 30.7
CSS0001593 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 1.0e-11 75.9 52 71.2
CSS0047757 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 1.3e-11 75.5 52 69.2
Eucgr.C02575 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.3e-11 75.5 106 44.3
A10p16180 Brassica napus HOM05D002136 ORTHO05D002145 1.7e-11 75.1 173 43.4
AL8G34080 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 2.2e-11 74.7 186 38.7
C09p49820 Brassica napus HOM05D002136 ORTHO05D002145 2.2e-11 74.7 185 37.3
PSO339G5388 Papaver somniferum HOM05D002136 ORTHO05D002145 2.2e-11 74.7 108 42.6
CSS0014039 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.9e-11 74.3 54 66.7
CSS0036585 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.8e-11 73.9 52 71.2
CSS0035282 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 6.5e-11 73.2 51 70.6
Sed0008209 Sechium edule HOM05D002136 ORTHO05D002145 8.4e-11 72.8 469 26.0
SGA_v2.0_scaffold206G41810 Striga asiatica HOM05D002136 ORTHO05D002145 1.1e-10 72.4 111 45.0
Aqoxy6G02864 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 1.4e-10 72.0 180 40.0
BraA10t43611Z Brassica rapa HOM05D002136 ORTHO05D002145 3.2e-10 70.9 120 42.5
Sp6g19660 Schrenkiella parvula HOM05D002136 ORTHO05D002145 5.5e-10 70.1 122 40.2
AT5G58000 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 7.1e-10 69.7 66 57.6
BcaB08g36161 Brassica carinata HOM05D002136 ORTHO05D002145 9.3e-10 69.3 179 35.8
CARHR271790 Cardamine hirsuta HOM05D002136 ORTHO05D002145 9.3e-10 69.3 185 38.9
SalBow1G7188 Salvia bowleyana HOM05D002136 ORTHO05D002145 1.2e-09 68.9 61 52.5
CDE05G2969 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 1.6e-09 68.6 114 41.2
CDE02G0562 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 3.5e-09 67.4 229 31.0
MELO3C004426.2 Cucumis melo HOM05D002136 ORTHO05D002145 3.5e-09 67.4 110 40.9
BraA05t22884Z Brassica rapa HOM05D002136 ORTHO05D002145 4.6e-09 67.0 122 39.3
ClCG02G017090 Citrullus lanatus HOM05D002136 ORTHO05D002145 4.6e-09 67.0 121 38.0
Lsat_1_v5_gn_4_154900 Lactuca sativa HOM05D002136 ORTHO05D048407 4.6e-09 67.0 127 44.1
A02p08060 Brassica napus HOM05D002136 ORTHO05D002145 6.0e-09 66.6 121 38.0
BraA02t05879Z Brassica rapa HOM05D002136 ORTHO05D002145 6.0e-09 66.6 121 38.0
THA.LOC104818119 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 6.0e-09 66.6 67 52.2
Sed0006701 Sechium edule HOM05D002136 ORTHO05D002145 7.9e-09 66.2 118 33.9
Carub.0008s1853 Capsella rubella HOM05D002136 ORTHO05D002145 1.0e-08 65.9 183 40.4
Hma1.2p1_0022F.1_g014630 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 1.3e-08 65.5 120 38.3
Hma1.2p1_0178F.1_g078555 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 1.3e-08 65.5 120 38.3
Hma1.2p1_1346F.1_g277210 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 5.1e-08 63.5 51 62.7
Nn1g06481 Nelumbo nucifera HOM05D002136 ORTHO05D002145 5.1e-08 63.5 42 69.0
BcaB05g22392 Brassica carinata HOM05D002136 ORTHO05D002145 6.7e-08 63.2 121 36.4
C02p13700 Brassica napus HOM05D002136 ORTHO05D002145 6.7e-08 63.2 121 37.2
BolC2t07489H Brassica oleracea HOM05D002136 ORTHO05D002145 6.7e-08 63.2 121 37.2
Zm00001eb177690 Zea mays HOM05D002136 ORTHO05D002145 6.7e-08 63.2 97 37.1
CsaV3_2G003680 Cucumis sativus L. HOM05D002136 ORTHO05D002145 1.1e-07 62.4 110 40.0
HPP92_003754 Vanilla planifolia HOM05D002136 ORTHO05D025738 1.5e-07 62.0 93 43.0
SEGI_31990 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 4.3e-07 60.5 64 43.8
PGR142G3530 Punica granatum HOM05D002136 ORTHO05D002145 7.4e-07 59.7 128 34.4
unitig_748.g7199 Utricularia gibba HOM05D002136 ORTHO05D002145 2.8e-06 57.8 107 43.0
Aa31LG3G13790 Aethionema arabicum HOM05D002136 ORTHO05D002145 3.7e-06 57.4 69 44.9
PSO782G3912 Papaver somniferum HOM05D002136 ORTHO05D002145 4.8e-06 57.0 125 39.2
SEGI_08782 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 8.2e-06 56.2 68 41.2


User provided reference genes

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