Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 3.8e-108 394.8 197 100.0
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 2.5e-67 259.2 193 70.5
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 2.8e-58 229.2 193 64.8
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 4.9e-55 218.4 183 61.7
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 1.2e-53 213.8 190 62.6
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 8.7e-52 207.6 139 74.8
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 8.7e-52 207.6 140 73.6
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 1.5e-51 206.8 141 73.8
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 1.9e-51 206.5 145 72.4
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 3.3e-51 205.7 190 60.0
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 1.1e-49 200.7 140 72.9
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 1.2e-48 197.2 192 58.3
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 3.4e-48 195.7 182 58.8
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 3.4e-48 195.7 144 70.1
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 3.4e-48 195.7 179 63.1
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 4.5e-48 195.3 188 57.4
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 7.6e-48 194.5 164 62.2
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 2.2e-47 193.0 196 53.1
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 2.2e-47 193.0 141 69.5
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 2.9e-47 192.6 187 55.6
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 8.4e-47 191.0 182 59.3
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 8.4e-47 191.0 129 71.3
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 8.4e-47 191.0 151 65.6
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 1.1e-46 190.7 137 70.1
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.9e-46 189.9 182 56.6
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 1.9e-46 189.9 195 52.8
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 5.5e-46 188.3 148 65.5
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 5.5e-46 188.3 142 64.8
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 9.3e-46 187.6 142 64.8
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 9.3e-46 187.6 191 58.1
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 1.2e-45 187.2 152 63.2
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 1.2e-45 187.2 146 64.4
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 1.6e-45 186.8 171 57.3
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 2.1e-45 186.4 153 62.1
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 2.7e-45 186.0 143 67.8
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 6.0e-45 184.9 188 54.8
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 6.0e-45 184.9 158 62.0
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 7.9e-45 184.5 186 56.5
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 1.3e-44 183.7 149 63.8
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 1.3e-44 183.7 158 61.4
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 3.0e-44 182.6 127 68.5
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.9e-44 182.2 146 65.1
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 5.1e-44 181.8 152 61.8
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 6.7e-44 181.4 176 56.2
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 1.9e-43 179.9 139 66.2
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 1.9e-43 179.9 189 54.0
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 2.5e-43 179.5 127 68.5
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 3.3e-43 179.1 143 66.4
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 3.3e-43 179.1 178 56.7
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 5.7e-43 178.3 176 55.1
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 5.7e-43 178.3 167 57.5
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 5.7e-43 178.3 127 66.9
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 7.4e-43 177.9 178 56.2
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 7.4e-43 177.9 178 56.2
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 7.4e-43 177.9 147 63.3
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 7.4e-43 177.9 149 61.7
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 9.6e-43 177.6 188 56.4
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.6e-42 176.8 139 66.2
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 2.8e-42 176.0 144 64.6
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 2.8e-42 176.0 139 65.5
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 2.8e-42 176.0 145 60.7
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 2.8e-42 176.0 129 65.9
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 2.8e-42 176.0 146 63.0
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.1e-41 174.1 139 64.0
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.1e-41 174.1 146 61.6
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 1.8e-41 173.3 127 65.4
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 2.4e-41 172.9 155 59.4
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 3.1e-41 172.6 187 55.1
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 4.0e-41 172.2 127 67.7
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 4.0e-41 172.2 127 65.4
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 6.9e-41 171.4 127 67.7
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 1.5e-40 170.2 166 56.0
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 1.5e-40 170.2 180 51.7
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 2.0e-40 169.9 213 46.9
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 3.4e-40 169.1 139 62.6
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 4.5e-40 168.7 139 62.6
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 7.6e-40 167.9 127 63.0
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 7.6e-40 167.9 123 64.2
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 1.7e-39 166.8 123 68.3
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 2.2e-39 166.4 126 62.7
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 2.9e-39 166.0 137 59.9
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 8.4e-39 164.5 135 59.3
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 2.5e-38 162.9 187 50.8
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 4.2e-38 162.2 129 62.8
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 2.1e-37 159.8 123 64.2
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 3.5e-37 159.1 118 67.8
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 4.6e-37 158.7 151 58.3
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 6.3e-34 148.3 102 68.6
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 1.1e-33 147.5 113 68.1
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 1.4e-33 147.1 189 44.4
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 1.0e-31 141.0 132 51.5
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.3e-31 140.6 140 56.4
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 6.1e-29 131.7 120 55.0
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.0e-28 129.4 87 72.4
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.0e-28 129.4 87 72.4
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 1.1e-27 127.5 92 67.4
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 1.1e-27 127.5 85 71.8
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.5e-27 127.1 84 70.2
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 1.4e-25 120.6 89 65.2
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 4.1e-25 119.0 82 72.0
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.5e-24 117.1 86 64.0
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 5.0e-23 112.1 73 72.6
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 3.0e-20 102.8 80 65.0
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 3.0e-20 102.8 80 65.0
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 1.1e-19 100.9 121 46.3
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 7.4e-19 98.2 120 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 3.6e-13 79.3 120 41.7
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 1.8e-12 77.0 61 55.7
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 6.7e-12 75.1 203 30.0
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 1.7e-10 70.5 109 42.2
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 7.0e-09 65.1 32 87.5
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.5e-08 62.4 41 70.7
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 3.2e-06 56.2 67 47.8


User provided reference genes

Program Settings