Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 3.0e-149 531.9 290 100.0
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 3.0e-69 266.2 324 55.6
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.5e-55 219.9 315 48.3
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 7.3e-47 191.8 319 43.9
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 7.3e-47 191.8 319 43.9
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.4e-45 187.6 269 51.7
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 3.1e-45 186.4 319 40.8
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.0e-44 183.7 324 44.1
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.2e-41 174.5 320 40.0
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.2e-41 174.5 315 39.7
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 2.0e-41 173.7 312 40.7
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.7e-41 173.3 308 40.3
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.0e-41 172.2 316 40.2
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.0e-40 171.4 314 39.8
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.0e-40 171.4 301 40.2
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.0e-40 171.4 301 40.2
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 3.0e-40 169.9 310 37.4
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.6e-38 164.1 305 39.3
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 1.6e-38 164.1 319 37.3
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.1e-38 163.7 306 38.6
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 2.8e-38 163.3 308 40.3
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 6.2e-38 162.2 325 37.2
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 3.7e-35 152.9 310 38.1
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.4e-35 152.1 326 38.7
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.1e-34 151.4 324 37.7
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.9e-34 150.6 316 36.7
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 2.4e-34 150.2 210 54.3
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 9.2e-34 148.3 316 36.7
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 2.7e-33 146.7 312 35.9
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.6e-33 146.0 312 35.3
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 6.0e-33 145.6 311 34.7
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 3.9e-32 142.9 296 37.5
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.9e-31 140.6 332 38.0
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 7.3e-31 138.7 295 36.9
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 6.2e-30 135.6 320 35.3
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 6.2e-30 135.6 320 35.3
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 6.8e-29 132.1 325 33.8
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 8.9e-29 131.7 317 36.6
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.2e-28 131.3 325 37.2
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.4e-28 129.4 327 37.0
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 7.6e-28 128.6 243 39.1
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.9e-28 128.3 320 31.2
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 9.9e-28 128.3 336 33.6
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.1e-26 124.8 324 33.6
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 1.1e-26 124.8 311 32.2
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.4e-26 124.4 310 32.9
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.4e-26 124.4 234 42.7
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.2e-26 123.2 300 33.0
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.9e-24 116.3 319 32.3
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.6e-24 115.5 300 31.3
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-23 114.8 314 32.2
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-23 114.8 314 32.2
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.9e-23 114.0 322 31.4
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.9e-23 114.0 315 30.8
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-23 113.6 302 34.1
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 2.5e-23 113.6 304 34.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 3.3e-23 113.2 314 32.5
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 5.6e-23 112.5 310 32.3
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.3e-23 112.1 317 31.5
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 9.6e-23 111.7 321 30.5
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 2.1e-22 110.5 330 31.5
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 4.7e-22 109.4 247 34.8
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 6.2e-22 109.0 316 31.6
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 1.4e-21 107.8 321 31.8
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.8e-21 107.5 313 32.6
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 2.4e-21 107.1 321 30.2
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.0e-21 106.3 308 32.1
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 6.9e-21 105.5 297 30.0
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.2e-20 104.8 304 30.6
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-20 104.4 305 30.5
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 2.6e-20 103.6 300 30.0
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 5.8e-20 102.4 315 30.2
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 5.8e-20 102.4 319 28.8
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 5.8e-20 102.4 315 30.2
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 5.8e-20 102.4 320 30.0
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 5.8e-20 102.4 319 28.8
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 5.8e-20 102.4 315 29.5
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.7e-19 100.9 321 30.2
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 2.2e-19 100.5 299 32.4
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.9e-19 100.1 301 28.6
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.9e-19 99.4 339 29.8
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 8.4e-19 98.6 324 31.5
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.1e-18 98.2 320 33.8
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-18 97.8 323 30.0
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 3.2e-18 96.7 299 31.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 9.3e-18 95.1 283 30.7
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 9.3e-18 95.1 318 30.8
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-17 94.4 326 29.8
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.7e-17 93.6 321 29.0
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.5e-17 93.2 299 30.8
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 3.5e-17 93.2 326 28.8
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 4.6e-17 92.8 323 29.7
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 4.6e-17 92.8 323 29.7
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 6.0e-17 92.4 303 32.3
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 7.8e-17 92.0 306 31.4
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.3e-16 90.5 230 33.0
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.3e-16 90.5 256 31.2
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 3.9e-16 89.7 293 32.4
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 1.5e-15 87.8 317 27.8
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 1.5e-15 87.8 307 29.6
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.5e-15 87.0 324 24.4
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 3.3e-15 86.7 102 52.0
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.3e-15 86.7 314 29.3
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.6e-15 85.9 313 29.1
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.3e-14 84.7 316 26.6
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.3e-14 84.7 249 31.7
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.1e-14 84.0 218 31.2
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 2.1e-14 84.0 124 41.1
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 1.1e-13 81.6 231 35.9
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-13 81.6 314 29.0
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.3e-13 79.3 321 27.1
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 1.2e-12 78.2 297 30.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.6e-12 77.0 309 27.8
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 9.9e-12 75.1 304 32.6
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 2.9e-11 73.6 254 33.1
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.9e-11 73.6 234 29.1
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.4e-11 72.4 316 29.7
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.4e-11 72.0 303 27.4
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 5.4e-10 69.3 285 26.7
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 7.1e-10 68.9 240 28.3
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.2e-09 68.2 331 29.6
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-09 67.8 290 26.6
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.0e-08 65.1 386 26.2
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 1.3e-08 64.7 260 28.5
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 6.7e-08 62.4 236 28.8
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-07 61.6 308 28.2
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 3.3e-07 60.1 324 28.4
Rhsim01G0010100 Rhododendron simsii HOM05D004960 ORTHO05D004696 9.6e-07 58.5 118 38.1
CDE04G1275 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 1.3e-06 58.2 317 26.5
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.3e-06 58.2 238 33.6
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 1.6e-06 57.8 157 31.8
Sed0002264 Sechium edule HOM05D001062 ORTHO05D000884 1.6e-06 57.8 325 24.9
SalBow6G6841 Salvia bowleyana HOM05D015143 ORTHO05D004696 2.1e-06 57.4 293 27.3
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 2.8e-06 57.0 318 25.8
VMungo0647G0121 Vigna mungo HOM05D001062 ORTHO05D000884 2.8e-06 57.0 315 24.8
Zm00001eb388210 Zea mays HOM05D020224 ORTHO05D023040 6.2e-06 55.8 245 25.3
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 8.1e-06 55.5 301 26.9


User provided reference genes

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