Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.7e-199 698.4 328 100.0
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 3.9e-174 614.8 326 89.6
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 3.9e-174 614.8 326 89.6
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.1e-171 604.7 326 84.7
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 4.7e-167 591.3 326 83.1
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 5.1e-166 587.8 318 84.0
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 3.7e-164 581.6 311 84.9
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 8.2e-164 580.5 311 84.2
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 1.4e-163 579.7 312 84.0
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.2e-162 576.6 326 80.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.6e-162 576.2 314 83.8
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 7.7e-162 573.9 321 81.6
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.3e-161 573.2 311 83.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.2e-161 572.4 318 82.4
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.5e-160 569.7 311 82.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.9e-160 569.3 319 81.8
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.5e-160 568.9 318 82.4
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 4.2e-160 568.2 314 83.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 2.1e-159 565.8 318 81.1
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 3.6e-159 565.1 314 81.2
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 4.7e-159 564.7 319 80.6
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.1e-159 564.3 318 81.1
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 6.1e-159 564.3 312 81.4
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-158 563.1 318 80.8
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 3.0e-158 562.0 325 78.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.1e-157 560.1 318 80.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-157 560.1 318 80.8
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-157 560.1 318 78.9
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-157 560.1 317 80.4
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.1e-157 560.1 313 80.8
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 2.0e-157 559.3 319 81.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.0e-157 559.3 311 81.0
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.0e-157 559.3 319 79.3
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.0e-157 559.3 316 79.4
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.6e-157 558.9 314 81.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.6e-157 558.9 319 79.3
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.6e-157 558.9 305 82.3
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 2.6e-157 558.9 323 78.3
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.3e-157 558.5 318 79.6
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 7.5e-157 557.4 316 81.0
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.2e-156 555.8 312 81.1
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 2.2e-156 555.8 317 78.5
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.8e-156 555.4 324 78.4
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 3.7e-156 555.1 326 76.7
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.4e-155 553.1 311 80.4
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.8e-155 552.7 308 83.4
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.4e-155 552.4 314 80.9
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 3.1e-155 552.0 318 79.6
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 4.1e-155 551.6 311 80.7
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 7.0e-155 550.8 308 81.8
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 7.0e-155 550.8 318 79.6
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.6e-154 549.7 314 78.7
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.6e-154 549.7 314 79.3
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 5.9e-154 547.7 310 79.4
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.0e-153 547.0 325 77.5
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 2.2e-153 545.8 331 77.0
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.2e-153 545.8 318 76.7
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.2e-153 545.8 314 78.7
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 3.8e-153 545.0 310 79.0
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.8e-153 545.0 314 79.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 5.0e-153 544.7 307 78.8
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 4.2e-152 541.6 325 75.7
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 5.5e-152 541.2 313 78.3
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.5e-152 541.2 312 78.8
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 9.4e-152 540.4 311 78.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.2e-151 540.0 313 78.3
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.2e-151 540.0 320 77.8
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 1.6e-151 539.7 314 77.7
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.7e-151 538.9 310 77.7
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.0e-150 537.0 313 78.9
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.4e-150 536.6 313 78.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 1.8e-150 536.2 309 79.3
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.8e-150 536.2 319 78.1
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.3e-150 535.8 309 79.0
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.3e-150 535.8 311 77.2
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 3.0e-150 535.4 324 73.8
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 3.0e-150 535.4 310 76.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 6.8e-150 534.3 309 79.0
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.8e-150 534.3 309 79.0
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.5e-149 533.1 313 77.6
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.6e-149 532.3 319 77.4
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 3.4e-149 531.9 309 79.0
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 5.7e-149 531.2 309 78.6
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.7e-148 529.6 310 76.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.2e-148 529.3 309 78.6
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 2.2e-148 529.3 309 78.3
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 2.2e-148 529.3 310 76.5
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.8e-148 528.9 308 77.6
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 4.8e-148 528.1 313 76.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 7.0e-147 524.2 305 79.0
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 9.1e-147 523.9 313 77.0
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 2.9e-145 518.8 314 77.4
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.0e-145 518.1 308 75.6
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 6.5e-145 517.7 309 76.1
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.2e-144 515.4 308 74.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.6e-143 513.1 312 75.3
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 4.0e-142 508.4 325 73.2
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.3e-140 503.4 325 69.2
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.5e-138 495.4 312 73.7
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.5e-138 495.0 311 74.3
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.9e-136 489.6 312 73.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.3e-136 488.8 345 69.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.3e-136 488.8 345 69.0
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 7.3e-136 487.6 304 74.3
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 8.0e-135 484.2 304 73.0
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 4.6e-130 468.4 305 72.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.7e-129 466.5 305 72.5
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.1e-126 455.7 312 68.9
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.7e-124 449.9 307 70.4
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.9e-123 446.4 310 65.2
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 3.2e-123 445.7 302 65.9
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.5e-120 436.8 447 52.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.5e-120 436.8 284 68.0
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 3.6e-119 432.2 277 69.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.3e-118 429.5 319 59.2
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 2.2e-116 422.9 239 79.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 2.9e-116 422.5 307 60.3
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 4.9e-116 421.8 302 62.6
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.4e-107 393.7 310 58.4
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 7.3e-104 381.3 210 82.9
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 7.1e-99 364.8 209 78.9
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 2.8e-95 352.8 198 79.8
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.4e-94 349.7 256 65.2
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.9e-92 342.8 214 73.4
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 7.6e-85 318.2 173 80.9
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 4.9e-84 315.5 184 77.2
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.1e-83 314.3 176 79.0
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.6e-82 308.9 305 56.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 2.1e-79 300.1 302 48.0
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 5.2e-49 199.1 208 47.1
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.6e-42 176.4 101 75.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.2e-39 167.2 99 79.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 5.3e-38 162.5 87 81.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.7e-32 142.5 94 67.0
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.3e-28 131.3 83 71.1
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-28 131.0 73 79.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 8.5e-28 128.6 79 77.2
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.5e-27 127.9 313 30.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.2e-26 124.8 91 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.4e-24 116.3 309 28.2
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 3.8e-20 103.2 65 75.4
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 6.4e-15 85.9 312 26.6
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.3e-12 78.2 184 31.0
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.5e-11 73.9 41 70.7
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.6e-10 70.1 49 73.5
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-09 68.2 48 60.4
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.9e-07 60.5 43 67.4


User provided reference genes

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