Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.2e-44 183.0 104 100.0
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 3.1e-32 141.7 100 78.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.1e-25 119.0 99 72.7
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.1e-25 119.0 99 73.7
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.2e-21 105.1 99 70.7
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 9.3e-21 103.6 111 58.6
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.9e-20 100.5 106 55.7
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 8.7e-19 97.1 103 57.3
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.5e-18 96.3 103 56.3
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.3e-17 93.2 108 53.7
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.8e-17 92.0 107 56.1
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 2.8e-17 92.0 107 55.1
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.8e-17 92.0 108 53.7
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.8e-17 91.3 109 51.4
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 6.3e-17 90.9 101 58.4
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.1e-16 90.1 103 51.5
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.1e-16 90.1 106 66.0
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.4e-16 89.7 101 61.4
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.4e-16 89.7 112 49.1
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-16 89.0 103 51.5
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 2.4e-16 89.0 107 60.7
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 3.1e-16 88.6 104 53.8
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 3.1e-16 88.6 107 52.3
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 5.3e-16 87.8 107 52.3
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 5.3e-16 87.8 99 52.5
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 6.9e-16 87.4 108 51.9
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 6.9e-16 87.4 103 63.1
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 9.0e-16 87.0 104 51.9
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 9.0e-16 87.0 103 50.5
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 9.0e-16 87.0 99 50.5
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.2e-15 86.7 107 54.2
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-15 86.7 104 51.9
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.2e-15 86.7 99 56.6
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.5e-15 86.3 104 51.9
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.5e-15 86.3 125 48.8
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 51.9
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 51.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 51.0
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 51.0
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 50.0
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.0e-15 85.9 104 51.0
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.0e-15 85.9 101 65.3
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.6e-15 85.5 104 50.0
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.6e-15 85.5 101 64.4
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.6e-15 85.5 105 59.0
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.6e-15 85.5 107 51.4
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 4.5e-15 84.7 104 51.0
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 4.5e-15 84.7 104 51.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 4.5e-15 84.7 104 51.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 5.9e-15 84.3 104 51.0
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 5.9e-15 84.3 100 64.0
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.9e-15 84.3 101 64.4
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.9e-15 84.3 101 64.4
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 7.7e-15 84.0 99 62.6
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.7e-15 84.0 113 49.6
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.0e-14 83.6 104 55.8
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.3e-14 83.2 104 51.0
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.3e-14 83.2 104 47.1
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.3e-14 83.2 101 65.3
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.7e-14 82.8 107 50.5
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-14 82.8 107 50.5
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.7e-14 82.8 104 56.7
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.2e-14 82.4 104 50.0
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.8e-14 81.6 104 50.0
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 6.5e-14 80.9 101 61.4
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 6.5e-14 80.9 111 46.8
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 6.5e-14 80.9 99 55.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 6.5e-14 80.9 99 48.5
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 8.5e-14 80.5 96 49.0
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 8.5e-14 80.5 116 50.9
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 8.5e-14 80.5 99 48.5
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.1e-13 80.1 115 47.0
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.9e-13 79.3 102 61.8
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 2.5e-13 79.0 103 47.6
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 2.5e-13 79.0 102 61.8
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 3.2e-13 78.6 99 58.6
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 4.2e-13 78.2 107 52.3
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 5.5e-13 77.8 114 46.5
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 5.5e-13 77.8 114 46.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 5.5e-13 77.8 104 48.1
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.2e-12 76.6 105 44.8
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.6e-12 76.3 108 53.7
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.6e-12 76.3 104 59.6
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.6e-12 76.3 102 60.8
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.6e-12 76.3 106 45.3
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.1e-12 75.9 101 46.5
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.1e-12 75.9 100 60.0
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.1e-12 75.9 104 45.2
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 2.7e-12 75.5 94 48.9
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.6e-12 74.7 100 61.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 4.6e-12 74.7 104 56.7
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.6e-12 74.7 99 58.6
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 6.1e-12 74.3 101 57.4
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 7.9e-12 73.9 102 58.8
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 7.9e-12 73.9 104 46.2
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 7.9e-12 73.9 104 49.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.0e-11 73.6 98 48.0
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.0e-11 73.6 117 48.7
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.0e-11 73.6 97 43.3
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.4e-11 73.2 109 46.8
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 1.4e-11 73.2 101 45.5
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.8e-11 72.8 102 46.1
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.3e-11 72.4 100 48.0
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 3.0e-11 72.0 105 46.7
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 3.9e-11 71.6 100 45.0
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 5.1e-11 71.2 105 46.7
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 5.1e-11 71.2 91 50.5
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.1e-10 70.1 102 47.1
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.5e-10 69.7 102 41.2
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.0e-10 69.3 102 44.1
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 2.0e-10 69.3 95 46.3
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 2.0e-10 69.3 137 34.3
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.5e-10 68.9 94 53.2
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 2.5e-10 68.9 99 56.6
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 3.3e-10 68.6 100 57.0
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 3.3e-10 68.6 137 34.3
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 7.4e-10 67.4 100 52.0
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 7.4e-10 67.4 98 44.9
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 9.7e-10 67.0 104 44.2
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.7e-09 66.2 91 41.8
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.2e-09 65.9 92 56.5
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.2e-09 65.9 92 56.5
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 2.2e-09 65.9 95 47.4
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.8e-09 65.5 92 56.5
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 4.8e-09 64.7 103 44.7
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 8.2e-09 63.9 109 39.4
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 1.4e-08 63.2 95 40.0
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.4e-08 62.4 91 44.0
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-08 62.4 97 51.5
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 4.1e-08 61.6 99 43.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.3e-08 61.2 96 40.6
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 6.9e-08 60.8 95 43.2
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.5e-07 59.7 102 52.9
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.6e-07 58.9 99 37.4
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.6e-07 58.9 98 41.8
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.4e-07 58.5 108 40.7
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.5e-07 58.2 125 36.8
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.8e-06 55.1 91 39.6
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 3.8e-06 55.1 35 77.1
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 8.5e-06 53.9 48 58.3


User provided reference genes

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