Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41120 Davidia involucrata HOM05D003222 ORTHO05D003706 3.0e-83 312.0 183 100.0
Actinidia10674 Actinidia chinensis HOM05D000043 ORTHO05D003706 2.9e-41 172.6 177 57.1
Haze_17713 Corylus avellana HOM05D003222 ORTHO05D003706 4.2e-40 168.7 175 63.4
Hma1.2p1_2059F.1_g312860 Hydrangea macrophylla HOM05D003222 ORTHO05D003706 4.6e-39 165.2 180 58.3
Cfa018361 Carpinus fangiana HOM05D003222 ORTHO05D003706 6.0e-39 164.9 175 60.6
CSS0010604 Camellia sinensis var. sinensis HOM05D003222 ORTHO05D003706 2.3e-38 162.9 175 55.4
CSS0028568 Camellia sinensis var. sinensis HOM05D003222 ORTHO05D003706 1.3e-36 157.1 177 56.5
Thecc.08G145000 Theobroma cacao HOM05D003222 ORTHO05D003706 9.0e-35 151.0 184 58.7
TAR381G1145 Trochodendron aralioides HOM05D003222 ORTHO05D003706 9.9e-34 147.5 147 55.8
GSVIVG01010034001 Vitis vinifera HOM05D003222 ORTHO05D003706 1.9e-32 143.3 179 55.3
Manes.02G175400 Manihot esculenta HOM05D003222 ORTHO05D003706 2.4e-32 142.9 188 50.5
CiPaw.16G017600 Carya illinoinensis HOM05D003222 ORTHO05D003706 3.2e-32 142.5 176 53.4
Eucgr.F02739 Eucalyptus grandis HOM05D003222 ORTHO05D003706 1.6e-31 140.2 177 59.3
CANSAT25G3175 Cannabis sativa HOM05D003222 ORTHO05D003706 3.5e-31 139.0 147 58.5
Hma1.2p1_1977F.1_g309770 Hydrangea macrophylla HOM05D003222 ORTHO05D003706 1.3e-30 137.1 135 61.5
Rhsim10G0083200 Rhododendron simsii HOM05D003222 ORTHO05D003706 2.3e-30 136.3 145 54.5
Medtr3g090140 Medicago truncatula HOM05D003222 ORTHO05D003706 2.1e-28 129.8 155 61.3
Nn5g28626 Nelumbo nucifera HOM05D003222 ORTHO05D003706 2.1e-28 129.8 147 54.4
Cc10_g12860 Coffea canephora HOM05D003222 ORTHO05D003706 2.8e-28 129.4 142 66.2
COL.COLO4_07952 Corchorus olitorius HOM05D003222 ORTHO05D003706 6.2e-28 128.3 159 59.7
MELO3C008408.2 Cucumis melo HOM05D003222 ORTHO05D003706 1.4e-27 127.1 151 64.2
Psat0s2193g0160 Pisum sativum HOM05D003222 ORTHO05D003706 1.8e-27 126.7 159 59.7
MSTRG.25331 Avicennia marina HOM05D003222 ORTHO05D003706 3.1e-27 125.9 145 49.0
CsaV3_6G030960 Cucumis sativus L. HOM05D003222 ORTHO05D003706 3.1e-27 125.9 151 57.0
ClCG08G006460 Citrullus lanatus HOM05D003222 ORTHO05D003706 5.3e-27 125.2 175 57.1
Cpa.g.sc49.62 Carica papaya HOM05D003222 ORTHO05D003706 6.9e-27 124.8 177 45.8
Migut.C01038 Erythranthe guttata HOM05D003222 ORTHO05D003706 2.0e-26 123.2 138 50.7
Gorai.009G252400 Gossypium raimondii HOM05D003222 ORTHO05D003706 3.4e-26 122.5 157 59.9
Gohir.A05G241800 Gossypium hirsutum HOM05D003222 ORTHO05D003706 4.5e-26 122.1 158 60.1
Nitab4.5_0001354g0070 Nicotiana tabacum HOM05D003222 ORTHO05D003706 4.5e-26 122.1 175 50.9
Sed0007582 Sechium edule HOM05D003222 ORTHO05D003706 7.6e-26 121.3 136 59.6
Sc11g0004110 Simmondsia chinensis HOM05D003222 ORTHO05D003706 9.9e-26 120.9 151 58.3
TWI60G0779 Tripterygium wilfordii HOM05D003222 ORTHO05D003706 3.8e-25 119.0 176 52.3
Gohir.D05G243100 Gossypium hirsutum HOM05D003222 ORTHO05D003706 4.9e-25 118.6 157 59.2
Prupe.8G019400 Prunus persica HOM05D003222 ORTHO05D003706 4.9e-25 118.6 177 57.1
SGA_v2.0_scaffold48G17947 Striga asiatica HOM05D003222 ORTHO05D003706 4.9e-25 118.6 138 54.3
PGR042G0343 Punica granatum HOM05D003222 ORTHO05D003706 1.4e-24 117.1 148 53.4
vmacro05471 Vaccinium macrocarpon HOM05D003222 ORTHO05D003706 1.4e-24 117.1 155 48.4
Lj1g0028017 Lotus japonicus HOM05D003222 ORTHO05D003706 3.2e-24 115.9 187 52.9
Nitab4.5_0000165g0020 Nicotiana tabacum HOM05D003222 ORTHO05D003706 9.3e-24 114.4 122 63.1
Ca_16653_v3 Cicer arietinum L. HOM05D003222 ORTHO05D003706 2.1e-23 113.2 159 52.8
Glyma.04G240500 Glycine max HOM05D003222 ORTHO05D003706 4.6e-23 112.1 175 50.9
Lalb_Chr11g0066441 Lupinus albus HOM05D003222 ORTHO05D003706 4.6e-23 112.1 142 56.3
SalBow7G3303 Salvia bowleyana HOM05D003222 ORTHO05D003706 4.6e-23 112.1 141 61.0
Sabra02G0056500 Salix brachista HOM05D003222 ORTHO05D003706 1.5e-21 107.1 178 54.5
HanXRQChr08g0232571 Helianthus annuus HOM05D003222 ORTHO05D003706 1.9e-21 106.7 137 62.8
QL02p025275 Quercus lobata HOM05D003222 ORTHO05D003706 2.5e-21 106.3 63 84.1
Phvul.009G135000 Phaseolus vulgaris HOM05D003222 ORTHO05D003706 3.3e-21 105.9 148 51.4
Ciclev10001907m.g Citrus clementina HOM05D003222 ORTHO05D003706 4.3e-21 105.5 180 47.2
arahy.Tifrunner.gnm1.ann1.EV65WI Arachis hypogaea HOM05D003222 ORTHO05D003706 9.6e-21 104.4 168 56.0
PSO675G4739 Papaver somniferum HOM05D000091 ORTHO05D003024 9.6e-21 104.4 69 79.7
Aqoxy3G00819 Aquilegia oxysepala HOM05D003222 ORTHO05D003706 2.1e-20 103.2 137 47.4
PSO541G0284 Papaver somniferum HOM05D003222 ORTHO05D003706 2.1e-20 103.2 69 78.3
Potri.002G071700 Populus trichocarpa HOM05D003222 ORTHO05D003706 2.1e-20 103.2 178 53.9
TPR.G18782 Trifolium pratense HOM05D000058 ORTHO05D003706 2.1e-20 103.2 191 50.3
RcHm_v2.0_Chr6g0277091 Rosa chinensis HOM05D003222 ORTHO05D003706 3.7e-20 102.4 180 52.8
Lsat_1_v5_gn_6_96600 Lactuca sativa HOM05D003222 ORTHO05D003706 6.2e-20 101.7 126 65.1
Lj4A691T75 Lonicera japonica HOM05D003222 ORTHO05D003706 8.2e-20 101.3 64 79.7
VMungo1309G1965 Vigna mungo HOM05D000058 ORTHO05D000077 2.4e-19 99.8 128 64.8
MBI06_g18872_MAGBIO Magnolia biondii HOM05D003222 ORTHO05D003706 5.3e-19 98.6 140 47.1
arahy.Tifrunner.gnm1.ann1.5V4LVB Arachis hypogaea HOM05D003222 ORTHO05D003706 6.9e-19 98.2 165 55.2
FvH4_2g14620 Fragaria vesca HOM05D003222 ORTHO05D003706 6.9e-19 98.2 135 56.3
Os04g0438300 Oryza sativa ssp. japonica HOM05D003222 ORTHO05D003706 2.6e-18 96.3 69 73.9
FAN24G1831 Fragaria x ananassa HOM05D003222 ORTHO05D003706 3.4e-18 95.9 135 57.0
Oeu007011.1 Olea europaea HOM05D003222 ORTHO05D003706 3.4e-18 95.9 63 73.0
EL10Ac1g01476 Beta vulgaris HOM05D003222 ORTHO05D003706 2.2e-17 93.2 162 53.1
CARHR070600 Cardamine hirsuta HOM05D003222 ORTHO05D003706 2.2e-17 93.2 69 71.0
Hund26727 Selenicereus undatus HOM05D003222 ORTHO05D003706 3.8e-17 92.4 148 43.9
Peaxi162Scf00130g00920 Petunia axillaris HOM05D003222 ORTHO05D003706 1.4e-16 90.5 63 71.4
MD05G1016000 Malus domestica HOM05D003222 ORTHO05D003706 3.2e-16 89.4 152 55.9
HPP92_005673 Vanilla planifolia HOM05D003222 ORTHO05D003706 3.2e-16 89.4 69 65.2
CDE02G3342 Ceratophyllum demersum HOM05D003222 ORTHO05D003706 1.6e-15 87.0 189 38.6
FAN15G2791 Fragaria x ananassa HOM05D003222 ORTHO05D003706 2.7e-15 86.3 135 59.3
FAN27G0383 Fragaria x ananassa HOM05D003222 ORTHO05D003706 7.9e-15 84.7 159 39.0
ECA246G5345 Erigeron canadensis HOM05D003222 ORTHO05D003706 1.0e-14 84.3 147 55.1
FAN20G1080 Fragaria x ananassa HOM05D003222 ORTHO05D003706 1.3e-14 84.0 135 58.5
AUR62026780 Chenopodium quinoa HOM05D003222 ORTHO05D003706 1.5e-13 80.5 66 63.6
Atru.chr13.2268 Acer truncatum HOM05D003222 ORTHO05D003706 4.3e-13 79.0 49 81.6
Aa31LG4G7160 Aethionema arabicum HOM05D003222 ORTHO05D003706 1.3e-12 77.4 61 67.2
Ah.05g167550 Amaranthus hybridus HOM05D003222 ORTHO05D003706 1.3e-12 77.4 57 68.4
AL2G37300 Arabidopsis lyrata HOM05D003222 ORTHO05D003706 1.3e-12 77.4 56 73.2
AUR62013496 Chenopodium quinoa HOM05D003222 ORTHO05D003706 8.2e-12 74.7 61 67.2
Thhalv10019703m.g Eutrema salsugineum HOM05D003222 ORTHO05D003706 8.2e-12 74.7 56 71.4
unitig_747.g21499 Utricularia gibba HOM05D003222 ORTHO05D003706 8.2e-12 74.7 63 58.7
THA.LOC104813692 Tarenaya hassleriana HOM05D003222 ORTHO05D003706 1.1e-11 74.3 187 46.0
Carub.0002s2401 Capsella rubella HOM05D003222 ORTHO05D003706 2.4e-11 73.2 55 70.9
AT1G77122 Arabidopsis thaliana HOM05D003222 ORTHO05D003706 5.3e-11 72.0 56 69.6
Ca_04997_v3 Cicer arietinum L. HOM05D003222 ORTHO05D003706 6.9e-11 71.6 63 52.4
Sp5g32263 Schrenkiella parvula HOM05D003222 ORTHO05D003706 1.2e-10 70.9 56 66.1
A07p42700 Brassica napus HOM05D003222 ORTHO05D003706 1.5e-10 70.5 55 65.5
BraA07t31792Z Brassica rapa HOM05D003222 ORTHO05D003706 1.5e-10 70.5 55 65.5
ATR1136G164 Amborella trichopoda HOM05D003222 ORTHO05D003706 2.0e-10 70.1 67 53.7
BcaC08g47210 Brassica carinata HOM05D003222 ORTHO05D003706 2.6e-10 69.7 55 65.5
C06p51290 Brassica napus HOM05D003222 ORTHO05D003706 2.6e-10 69.7 56 64.3
BolC6t40150H Brassica oleracea HOM05D003222 ORTHO05D003706 2.6e-10 69.7 55 65.5
BcaNung04777 Brassica carinata HOM05D003222 ORTHO05D003706 7.7e-10 68.2 55 63.6
Cfa008865 Carpinus fangiana HOM05D001307 ORTHO05D001158 1.3e-09 67.4 63 50.8
Migut.L01177 Erythranthe guttata HOM05D003222 ORTHO05D003706 1.7e-09 67.0 63 54.0
TPR.G23766 Trifolium pratense HOM05D003222 ORTHO05D003706 1.7e-09 67.0 63 49.2
Ciclev10032243m.g Citrus clementina HOM05D003222 ORTHO05D003706 2.2e-09 66.6 63 50.8
Lj2g0002793 Lotus japonicus HOM05D003222 ORTHO05D003706 2.9e-09 66.2 63 49.2
THA.LOC104822006 Tarenaya hassleriana HOM05D003222 ORTHO05D003706 3.8e-09 65.9 63 50.8
CSS0001402 Camellia sinensis var. sinensis HOM05D003222 ORTHO05D003706 5.0e-09 65.5 63 49.2
CSS0022285 Camellia sinensis var. sinensis HOM05D003222 ORTHO05D003706 5.0e-09 65.5 63 49.2
Haze_11889 Corylus avellana HOM05D003222 ORTHO05D003706 5.0e-09 65.5 63 49.2
QL03p073804 Quercus lobata HOM05D003222 ORTHO05D003706 5.0e-09 65.5 63 49.2
Nitab4.5_0000231g0070 Nicotiana tabacum HOM05D003222 ORTHO05D003706 6.5e-09 65.1 63 50.8
SEGI_04642 Sequoiadendron giganteum HOM05D003222 ORTHO05D003706 6.5e-09 65.1 62 56.5
TAR385G0001 Trochodendron aralioides HOM05D003222 ORTHO05D003706 6.5e-09 65.1 63 47.6
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 8.5e-09 64.7 41 80.5
Psat2g131600 Pisum sativum HOM05D003222 ORTHO05D003706 8.5e-09 64.7 63 46.0
TAR629G1435 Trochodendron aralioides HOM05D003222 ORTHO05D003706 8.5e-09 64.7 63 47.6
VMungo1215G0965 Vigna mungo HOM05D003222 ORTHO05D003706 8.5e-09 64.7 63 44.4
CARHR062090 Cardamine hirsuta HOM05D003222 ORTHO05D003706 1.1e-08 64.3 63 49.2
AUR62003085 Chenopodium quinoa HOM05D003222 ORTHO05D003706 1.1e-08 64.3 63 47.6
AUR62007902 Chenopodium quinoa HOM05D003222 ORTHO05D003706 1.1e-08 64.3 63 46.0
Hma1.2p1_0473F.1_g160290 Hydrangea macrophylla HOM05D003222 ORTHO05D003706 1.1e-08 64.3 63 49.2
SalBow2G3033 Salvia bowleyana HOM05D003222 ORTHO05D003706 1.1e-08 64.3 63 50.8
Solyc05g012120.3 Solanum lycopersicum HOM05D003222 ORTHO05D003706 1.1e-08 64.3 64 48.4
Sopen05g006910 Solanum pennellii HOM05D003222 ORTHO05D003706 1.1e-08 64.3 64 48.4
PGSC0003DMG400028364 Solanum tuberosum HOM05D003222 ORTHO05D003706 1.1e-08 64.3 64 48.4
CAN.G707.18 Capsicum annuum HOM05D003222 ORTHO05D003706 1.4e-08 63.9 67 49.3
CiPaw.06G093000 Carya illinoinensis HOM05D003222 ORTHO05D003706 1.9e-08 63.5 134 34.3
ClCG05G023640 Citrullus lanatus HOM05D003222 ORTHO05D003706 1.9e-08 63.5 63 47.6
Dinv34057 Davidia involucrata HOM05D003222 ORTHO05D003706 1.9e-08 63.5 63 49.2
Nn4g23474 Nelumbo nucifera HOM05D003222 ORTHO05D003706 1.9e-08 63.5 63 47.6
SEGI_17187 Sequoiadendron giganteum HOM05D003222 ORTHO05D003706 1.9e-08 63.5 63 50.8
Glyma.02G120100 Glycine max HOM05D003222 ORTHO05D003706 2.5e-08 63.2 63 44.4
Nitab4.5_0007734g0070 Nicotiana tabacum HOM05D003222 ORTHO05D003706 2.5e-08 63.2 63 49.2
arahy.Tifrunner.gnm1.ann1.6NGM5D Arachis hypogaea HOM05D003222 ORTHO05D003706 3.2e-08 62.8 65 41.5
Oeu031534.1 Olea europaea HOM05D003222 ORTHO05D003706 3.2e-08 62.8 63 47.6
Eucgr.G02432 Eucalyptus grandis HOM05D003222 ORTHO05D003706 4.2e-08 62.4 63 49.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 5.5e-08 62.0 56 58.9
Hund05831 Selenicereus undatus HOM05D003222 ORTHO05D003706 7.2e-08 61.6 63 46.0
arahy.Tifrunner.gnm1.ann1.535YF1 Arachis hypogaea HOM05D003222 ORTHO05D003706 9.4e-08 61.2 63 41.3
Cc11_g11840 Coffea canephora HOM05D003222 ORTHO05D003706 9.4e-08 61.2 63 46.0
ECA246G4739 Erigeron canadensis HOM05D003222 ORTHO05D003706 9.4e-08 61.2 63 44.4
Phvul.003G040900 Phaseolus vulgaris HOM05D003222 ORTHO05D003706 9.4e-08 61.2 62 43.5
SGA_v2.0_scaffold16G07804 Striga asiatica HOM05D003222 ORTHO05D003706 9.4e-08 61.2 63 50.8
CDE05G3480 Ceratophyllum demersum HOM05D003222 ORTHO05D003706 1.2e-07 60.8 62 48.4
FAN17G0356 Fragaria x ananassa HOM05D003222 ORTHO05D003706 1.2e-07 60.8 62 46.8
FAN22G1368 Fragaria x ananassa HOM05D003222 ORTHO05D003706 1.2e-07 60.8 62 46.8
unitig_22.g6490 Utricularia gibba HOM05D003222 ORTHO05D003706 1.2e-07 60.8 63 47.6
GSVIVG01012234001 Vitis vinifera HOM05D003222 ORTHO05D003706 1.2e-07 60.8 61 47.5
MSTRG.764 Avicennia marina HOM05D003222 ORTHO05D003706 1.6e-07 60.5 63 49.2
Potri.010G157300 Populus trichocarpa HOM05D003222 ORTHO05D003706 1.6e-07 60.5 62 46.8
RcHm_v2.0_Chr4g0438001 Rosa chinensis HOM05D003222 ORTHO05D003706 1.6e-07 60.5 162 34.6
COL.COLO4_27861 Corchorus olitorius HOM05D003222 ORTHO05D003706 2.1e-07 60.1 61 49.2
Gorai.013G095100 Gossypium raimondii HOM05D003222 ORTHO05D003706 2.1e-07 60.1 61 49.2
SalBow7G0099 Salvia bowleyana HOM05D003222 ORTHO05D003706 2.1e-07 60.1 140 47.9
TWI79G0802 Tripterygium wilfordii HOM05D003222 ORTHO05D003706 2.1e-07 60.1 64 45.3
MELO3C012158.2 Cucumis melo HOM05D003222 ORTHO05D003706 2.7e-07 59.7 63 44.4
CsaV3_5G033380 Cucumis sativus L. HOM05D003222 ORTHO05D003706 2.7e-07 59.7 63 44.4
FvH4_4g29740 Fragaria vesca HOM05D003222 ORTHO05D003706 2.7e-07 59.7 62 46.8
HanXRQChr15g0477141 Helianthus annuus HOM05D003222 ORTHO05D003706 2.7e-07 59.7 63 44.4
Manes.01G026850 Manihot esculenta HOM05D003222 ORTHO05D003706 2.7e-07 59.7 60 46.7
Medtr5g045020 Medicago truncatula HOM05D003222 ORTHO05D003706 2.7e-07 59.7 62 45.2
Aqoxy3G00518 Aquilegia oxysepala HOM05D003222 ORTHO05D003706 3.6e-07 59.3 69 44.9
FAN07G2400 Fragaria x ananassa HOM05D003222 ORTHO05D003706 3.6e-07 59.3 62 46.8
vmacro10435 Vaccinium macrocarpon HOM05D003222 ORTHO05D003706 3.6e-07 59.3 63 46.0
Gohir.A13G083700 Gossypium hirsutum HOM05D003222 ORTHO05D003706 4.6e-07 58.9 61 49.2
Gohir.D13G083300 Gossypium hirsutum HOM05D003222 ORTHO05D003706 4.6e-07 58.9 61 47.5
Lsat_1_v5_gn_3_53741 Lactuca sativa HOM05D003222 ORTHO05D003706 4.6e-07 58.9 63 44.4
DCAR_026681 Daucus carota HOM05D003222 ORTHO05D003706 6.1e-07 58.5 63 44.4
Mapoly0025s0053 Marchantia polymorpha HOM05D003222 ORTHO05D003706 6.1e-07 58.5 69 44.9
PSO017G5009 Papaver somniferum HOM05D003222 ORTHO05D003706 6.1e-07 58.5 67 44.8
Thhalv10018935m.g Eutrema salsugineum HOM05D003222 ORTHO05D003706 7.9e-07 58.2 64 48.4
MD13G1060300 Malus domestica HOM05D003222 ORTHO05D003706 7.9e-07 58.2 61 42.6
Lalb_Chr10g0098921 Lupinus albus HOM05D003222 ORTHO05D003706 1.0e-06 57.8 62 41.9
Peaxi162Scf00175g00420 Petunia axillaris HOM05D003222 ORTHO05D003706 1.0e-06 57.8 60 46.7
Lj3A1029T44 Lonicera japonica HOM05D003222 ORTHO05D003706 1.4e-06 57.4 63 44.4
EL10Ac6g15015 Beta vulgaris HOM05D003222 ORTHO05D003706 1.8e-06 57.0 63 41.3
Duzib248G1180 Durio zibethinus HOM05D003222 ORTHO05D003706 1.8e-06 57.0 61 44.3
HPP92_015665 Vanilla planifolia HOM05D003222 ORTHO05D003706 2.3e-06 56.6 63 42.9
ATR1098G144 Amborella trichopoda HOM05D003222 ORTHO05D003706 3.0e-06 56.2 63 46.0
Rhsim09G0126200 Rhododendron simsii HOM05D003222 ORTHO05D006027 3.0e-06 56.2 63 41.3
FAN12G0902 Fragaria x ananassa HOM05D003222 ORTHO05D003706 3.9e-06 55.8 62 45.2
Thecc.02G328200 Theobroma cacao HOM05D003222 ORTHO05D003706 6.7e-06 55.1 61 44.3
Os07g0155200 Oryza sativa ssp. japonica HOM05D003222 ORTHO05D003706 8.8e-06 54.7 59 47.5
PSO478G3185 Papaver somniferum HOM05D003222 ORTHO05D003706 8.8e-06 54.7 67 41.8
Zm00001eb117470 Zea mays HOM05D003222 ORTHO05D003706 8.8e-06 54.7 62 43.5


User provided reference genes

Program Settings