Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 0.0e+00 1429.5 725 100.0
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 0.0e+00 1155.6 704 84.8
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.0e-267 925.2 740 69.2
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.8e-257 891.3 785 64.3
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 6.7e-251 870.9 731 65.4
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.0e-243 847.0 730 63.8
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 6.7e-243 844.3 745 62.1
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.3e-230 803.5 749 61.0
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.5e-229 800.0 726 61.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.8e-222 775.4 723 61.0
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.5e-205 720.3 698 60.0
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 1.6e-204 716.8 756 55.2
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.8e-204 716.1 741 56.1
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.1e-200 704.1 855 49.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 5.6e-197 691.8 887 47.4
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.6e-196 690.3 745 54.2
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 9.9e-194 681.0 733 54.8
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 3.8e-193 679.1 729 54.7
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 6.2e-188 661.8 731 53.2
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 2.4e-184 649.8 732 54.5
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.2e-184 649.4 732 54.5
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 1.6e-183 647.1 730 53.0
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.1e-183 646.7 744 52.4
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 3.6e-180 636.0 755 52.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 4.8e-180 635.6 729 53.2
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.2e-178 630.9 733 54.3
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 2.9e-177 626.3 734 51.1
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 6.7e-174 615.1 744 50.8
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 6.7e-174 615.1 732 52.7
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.6e-170 603.2 750 50.0
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 4.9e-169 599.0 740 50.7
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 5.5e-168 595.5 747 50.3
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 1.2e-167 594.3 732 49.3
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 4.6e-167 592.4 746 50.3
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 5.1e-166 589.0 729 49.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 8.2e-164 581.6 752 50.0
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 3.1e-163 579.7 743 49.0
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 3.4e-162 576.2 749 48.5
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 7.6e-162 575.1 754 48.7
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.4e-160 570.9 751 48.1
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 9.3e-160 568.2 733 46.9
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 6.0e-159 565.5 800 45.9
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 1.0e-158 564.7 753 48.5
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 9.7e-157 558.1 753 47.8
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 2.8e-156 556.6 752 45.6
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 8.2e-156 555.1 732 48.0
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.2e-154 551.2 733 47.9
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 3.8e-153 546.2 731 46.4
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 6.5e-153 545.4 753 47.3
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.7e-151 540.0 726 47.0
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 2.7e-151 540.0 748 46.8
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.4e-150 537.7 732 47.5
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.8e-150 537.3 774 46.0
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.8e-148 530.0 721 46.7
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.0e-146 523.9 736 46.5
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 7.7e-146 521.9 736 46.3
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 7.9e-143 511.9 725 46.2
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.8e-140 503.4 743 45.1
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.3e-140 502.3 746 44.9
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.8e-139 500.7 751 44.7
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.8e-139 500.7 738 43.9
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 9.1e-139 498.4 753 45.9
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.0e-137 495.0 750 44.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 9.4e-136 488.4 743 44.5
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.1e-135 485.7 746 44.1
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.3e-132 478.0 748 43.6
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 6.3e-132 475.7 751 43.5
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 2.9e-129 466.8 735 43.0
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.2e-127 461.5 735 42.7
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 2.7e-127 460.3 738 42.4
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 9.7e-125 451.8 739 41.8
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.8e-118 431.0 724 42.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.7e-114 417.2 730 41.0
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 8.3e-108 395.6 732 39.9
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 9.2e-107 392.1 729 40.1
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 7.8e-106 389.0 773 39.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.3e-102 377.5 737 39.9
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.3e-102 377.5 737 39.8
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 3.1e-102 377.1 729 40.1
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 7.5e-101 372.5 739 37.6
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.7e-100 371.3 731 38.6
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.4e-99 367.5 766 37.5
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.1e-96 358.6 703 40.3
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.5e-96 357.5 296 65.5
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.3e-96 357.1 694 36.7
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 4.3e-96 356.7 737 38.7
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.1e-94 352.1 740 33.8
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.2e-93 348.6 735 39.6
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.2e-92 344.4 705 39.0
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 8.3e-92 342.4 683 37.0
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.9e-91 341.3 734 38.4
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.2e-90 338.6 722 37.4
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.2e-90 338.6 720 39.2
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 2.3e-89 334.3 779 37.4
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.5e-88 330.9 696 36.9
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.6e-87 328.2 742 32.7
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 2.1e-87 327.8 740 36.9
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 2.3e-86 324.3 816 36.0
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.8e-86 322.8 698 37.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.3e-84 318.5 772 36.4
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.7e-84 318.2 726 37.3
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.9e-84 317.4 733 37.2
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 4.1e-83 313.5 776 35.2
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 7.1e-83 312.8 766 36.2
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 7.8e-82 309.3 701 35.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.7e-81 308.1 764 34.8
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 3.9e-81 307.0 774 36.4
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 5.1e-81 306.6 727 35.2
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 4.3e-80 303.5 745 35.2
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 6.4e-76 289.7 780 33.5
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 7.1e-75 286.2 709 35.3
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 1.6e-74 285.0 561 41.0
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 6.6e-65 253.1 785 32.7
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.9e-64 251.5 658 34.2
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 4.3e-64 250.4 763 33.0
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 9.6e-64 249.2 762 32.9
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.3e-63 248.8 785 33.8
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.3e-63 248.8 785 33.8
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 4.5e-61 240.4 767 32.7
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 3.8e-60 237.3 862 31.1
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.1e-59 235.7 692 31.4
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 1.4e-59 235.3 769 32.6
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 7.1e-59 233.0 785 32.0
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 7.1e-59 233.0 785 32.0
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.2e-58 232.3 767 32.6
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.4e-51 208.8 156 70.5
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 2.5e-48 198.0 130 73.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 3.9e-41 174.1 749 29.4
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 7.4e-40 169.9 761 29.0
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 2.1e-34 151.8 616 29.5
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 5.5e-27 127.1 769 26.1
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.6e-26 125.6 743 27.1
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 1.0e-17 96.3 95 54.7
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.6e-13 81.6 264 35.2
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 5.9e-13 80.5 759 22.8
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 1.0e-12 79.7 208 30.3
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 2.9e-12 78.2 55 70.9
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 8.0e-10 70.1 114 38.6
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.1e-06 59.7 62 48.4


User provided reference genes

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