Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 5.6e-198 694.1 359 100.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 3.1e-172 608.6 362 87.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.5e-171 604.7 359 87.2
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-169 599.7 359 86.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.3e-169 597.0 355 87.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 4.6e-168 594.7 358 85.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.8e-167 592.8 358 84.9
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.3e-167 592.4 359 84.7
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.0e-167 592.0 361 85.6
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.0e-167 592.0 357 84.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.1e-167 591.3 357 86.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 6.7e-167 590.9 358 85.8
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.7e-167 590.9 359 85.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 6.7e-167 590.9 369 83.7
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-166 590.1 358 84.4
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.9e-166 589.3 354 85.3
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.3e-165 586.6 360 84.7
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.6e-165 586.3 361 85.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.1e-165 585.9 360 85.0
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 4.8e-165 584.7 363 84.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 6.2e-165 584.3 340 86.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 8.1e-165 583.9 359 84.4
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 8.1e-165 583.9 359 83.0
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.8e-164 582.8 358 84.1
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 3.1e-164 582.0 358 83.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 5.3e-164 581.3 359 82.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.9e-164 580.9 360 83.6
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-163 580.1 360 83.6
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.2e-163 580.1 360 83.9
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.9e-163 577.0 356 83.7
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.7e-162 576.2 359 84.4
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.7e-162 576.2 365 82.2
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.2e-162 575.9 363 82.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.9e-162 574.7 359 83.0
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 6.4e-162 574.3 360 81.1
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-161 573.5 368 81.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.4e-161 573.2 358 83.0
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.4e-161 573.2 359 82.7
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.9e-161 572.8 354 82.8
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.9e-161 572.8 361 81.7
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.4e-161 572.4 349 84.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 7.1e-161 570.9 341 86.2
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.2e-160 570.1 363 82.6
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 6.0e-160 567.8 360 81.1
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 7.9e-160 567.4 363 82.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 7.9e-160 567.4 358 82.1
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 5.1e-159 564.7 363 81.8
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.7e-159 564.3 350 84.3
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-158 563.1 349 81.7
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-158 563.1 349 81.7
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.9e-158 562.8 360 80.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.5e-158 562.4 360 81.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.5e-158 562.4 356 82.3
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.3e-158 561.6 367 80.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 7.4e-158 560.8 360 79.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.6e-157 559.7 349 81.9
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.8e-157 558.9 359 79.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.8e-157 558.9 359 79.9
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.2e-157 557.8 362 79.6
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 6.2e-157 557.8 361 81.2
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.1e-156 557.0 363 81.3
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.1e-156 557.0 359 80.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.4e-156 556.6 357 81.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 6.9e-156 554.3 350 81.7
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 6.9e-156 554.3 365 78.4
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 9.0e-156 553.9 360 81.1
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.6e-155 552.4 366 79.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.6e-155 552.4 350 80.9
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.4e-155 552.0 359 79.1
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.5e-155 551.6 397 75.8
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 7.6e-155 550.8 360 78.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.3e-154 550.1 354 81.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.3e-154 550.1 354 80.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.2e-154 549.3 359 78.6
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.9e-154 548.9 359 79.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.4e-153 546.6 367 79.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.4e-153 546.6 366 79.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.4e-153 546.6 360 80.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.4e-153 546.6 360 80.3
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.3e-153 543.9 370 77.8
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 9.3e-153 543.9 355 80.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.6e-152 541.6 370 77.6
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 7.9e-152 540.8 361 78.7
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 8.7e-151 537.3 354 78.2
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.5e-150 535.8 366 76.0
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.3e-150 535.4 390 73.8
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.7e-150 534.6 390 73.6
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 7.4e-150 534.3 359 78.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 3.7e-149 531.9 361 78.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.8e-149 531.6 353 79.0
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 6.3e-149 531.2 353 79.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-148 528.9 352 79.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 5.3e-148 528.1 362 75.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-147 526.9 358 75.4
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.2e-147 526.9 360 78.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.7e-147 524.2 354 77.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.0e-146 523.9 358 74.9
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.0e-146 523.9 315 84.4
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 6.5e-146 521.2 337 78.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 6.5e-146 521.2 336 79.8
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-144 515.4 353 77.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 3.6e-144 515.4 353 77.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 7.9e-144 514.2 365 75.9
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.3e-143 512.7 350 75.4
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-143 511.9 341 80.9
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-143 511.9 341 80.9
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.2e-138 496.1 334 76.3
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.9e-136 487.6 360 74.7
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.7e-125 453.4 364 69.5
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.5e-123 445.3 352 64.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 4.7e-120 435.3 271 82.3
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.0e-119 434.1 359 67.1
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.0e-119 434.1 303 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.3e-116 421.8 349 60.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 5.5e-113 411.8 350 59.7
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 7.2e-113 411.4 283 77.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.1e-112 409.8 335 67.2
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.3e-109 400.6 358 64.8
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 9.1e-108 394.4 324 68.2
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.3e-89 332.8 302 61.3
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.2e-80 304.3 263 63.5
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 6.0e-75 285.4 248 58.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.7e-74 283.9 330 46.4
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.3e-69 267.7 360 42.5
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 8.4e-69 265.0 370 41.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.7e-61 240.7 325 44.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.8e-61 239.6 386 39.4
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.2e-60 236.1 126 88.9
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-57 227.3 315 43.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 9.6e-57 224.9 145 79.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.9e-51 205.3 364 36.3
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-49 201.4 335 37.3
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.3e-47 192.6 103 89.3
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-46 191.0 103 88.3
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.8e-42 177.6 113 79.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.3e-41 172.9 131 67.9
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 9.3e-36 155.2 97 81.4
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.9e-33 147.5 138 61.6
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 6.1e-27 125.9 140 53.6
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-23 114.4 58 86.2
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.4e-23 114.0 65 86.2
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 9.4e-20 102.1 73 71.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.7e-19 99.8 101 52.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.0e-17 94.4 72 72.2
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 4.8e-16 89.7 65 69.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-13 81.6 101 42.6
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.5e-09 68.2 50 64.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 7.4e-09 65.9 54 64.8
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 9.7e-09 65.5 42 78.6
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 1.1e-07 62.0 66 59.1
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 1.8e-07 61.2 46 65.2
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 9.1e-07 58.9 63 55.6
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.2e-06 58.5 67 49.3
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.2e-06 58.5 64 54.7
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.5e-06 56.6 120 27.5
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 5.9e-06 56.2 120 27.5
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 5.9e-06 56.2 120 27.5
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 7.7e-06 55.8 120 27.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 7.7e-06 55.8 120 27.5


User provided reference genes

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