Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 0.0e+00 1794.2 951 100.0
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 0.0e+00 1163.3 900 73.8
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.0e-270 934.9 956 60.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.2e-269 931.8 956 60.3
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 3.8e-238 828.9 979 55.5
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.2e-226 790.8 949 54.2
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.3e-217 760.8 976 52.4
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 2.7e-215 753.1 960 52.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.2e-212 744.2 999 52.2
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.8e-212 743.0 960 51.8
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 1.2e-207 727.6 949 52.1
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 4.2e-200 702.6 980 49.6
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.1e-199 700.3 1083 46.4
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.4e-192 677.6 982 48.0
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 6.7e-190 668.7 960 48.6
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 3.9e-182 642.9 962 48.0
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 2.8e-180 636.7 980 47.6
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.8e-180 636.7 912 49.1
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 6.7e-174 615.5 994 45.5
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.2e-170 604.7 968 46.8
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.5e-170 604.4 976 46.1
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 4.5e-170 602.8 977 46.1
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.9e-169 600.1 977 46.2
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.4e-168 597.8 925 48.0
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.1e-167 594.0 950 45.7
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.1e-167 594.0 949 46.0
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 6.9e-163 578.9 965 45.3
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.6e-162 577.0 964 45.5
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.6e-162 577.0 976 44.0
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.0e-161 575.1 848 48.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 8.5e-161 572.0 950 45.4
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.2e-160 569.7 967 44.9
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 4.2e-160 569.7 982 42.6
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 5.5e-160 569.3 953 45.1
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.2e-160 568.9 964 45.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.7e-159 566.2 984 43.7
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.1e-159 565.8 963 45.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 7.9e-159 565.5 904 45.4
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.3e-156 558.1 957 44.8
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.7e-156 557.8 977 43.7
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.1e-155 553.5 895 45.9
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 3.4e-154 550.1 972 43.4
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.1e-149 535.0 923 43.4
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.1e-147 526.6 791 47.3
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 5.3e-147 526.2 778 48.2
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 5.0e-145 519.6 961 42.5
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.2e-144 516.9 973 43.2
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.5e-141 508.1 988 42.2
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.3e-140 505.0 974 41.8
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.4e-139 501.5 965 42.5
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 2.0e-138 497.7 977 42.1
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 5.9e-138 496.1 782 46.0
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 2.5e-136 490.7 980 42.2
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 4.2e-136 490.0 964 42.9
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 1.2e-135 488.4 974 40.5
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 2.8e-132 477.2 966 40.1
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.8e-131 474.6 994 40.0
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.5e-130 470.3 974 40.2
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.9e-129 467.2 995 39.8
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 6.6e-129 466.1 972 40.2
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 1.6e-127 461.5 885 42.8
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 6.1e-127 459.5 961 41.1
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 2.3e-126 457.6 977 39.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 3.0e-126 457.2 979 39.0
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 2.0e-125 454.5 961 39.4
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 5.7e-125 453.0 952 39.4
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.7e-124 450.3 883 41.4
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 3.1e-123 447.2 1012 38.7
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 7.0e-123 446.0 852 43.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.7e-121 441.4 847 41.7
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 5.0e-121 439.9 1008 38.1
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.2e-119 435.3 971 38.2
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.4e-118 431.8 968 39.0
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 2.0e-117 427.9 993 38.4
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 3.2e-115 420.6 974 37.0
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 7.8e-114 416.0 946 38.2
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.1e-112 412.1 983 38.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.2e-110 403.3 445 53.5
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.4e-109 400.6 436 54.1
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 8.3e-108 396.0 980 38.4
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 8.3e-108 396.0 826 40.8
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.1e-107 395.6 973 38.6
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 2.1e-106 391.3 1018 38.1
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 7.8e-106 389.4 997 36.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 7.3e-104 382.9 978 36.9
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 3.6e-103 380.6 865 38.6
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 8.1e-103 379.4 835 40.2
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.2e-101 375.6 1019 35.4
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.5e-101 375.2 1023 35.6
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.8e-101 373.2 465 53.8
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.7e-100 371.7 876 38.0
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 2.2e-100 371.3 971 36.7
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.9e-100 370.9 1001 35.9
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.7e-98 364.4 972 35.8
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.0e-97 362.5 979 37.8
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 3.6e-95 354.0 986 37.4
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 2.1e-90 338.2 710 40.0
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 3.5e-90 337.4 971 34.7
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 2.5e-88 331.3 1012 34.5
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 7.1e-83 313.2 955 32.9
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.8e-79 301.2 934 35.3
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 2.6e-77 294.7 924 34.0
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.1e-75 289.3 1046 32.1
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.4e-75 288.9 844 35.5
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.2e-75 287.7 1028 31.7
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 1.2e-74 285.8 812 35.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.6e-74 285.4 822 34.3
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 4.6e-74 283.9 976 31.9
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.3e-72 277.3 961 33.9
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.6e-66 258.8 296 58.8
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 5.3e-62 243.8 966 31.5
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 3.9e-57 227.6 957 30.1
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.0e-52 213.0 960 28.3
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 9.4e-35 153.3 98 80.6
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 4.7e-34 151.0 194 54.1
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.4e-32 144.4 101 76.2
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 8.2e-31 140.2 482 31.7
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.1e-27 129.8 239 39.3
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.7e-23 115.9 141 50.4
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.3e-20 106.3 430 28.8
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 3.8e-20 104.8 98 63.3
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 7.2e-19 100.5 66 78.8
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.0e-17 96.7 1042 25.0
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.2e-16 93.2 120 46.7
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 2.6e-16 92.0 230 37.0
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 9.8e-16 90.1 60 80.0
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.3e-15 89.7 60 78.3
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.4e-14 86.3 98 53.1
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 3.6e-10 71.6 1038 23.6
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 4.4e-08 64.7 86 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.2e-07 62.4 823 24.5
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 4.9e-07 61.2 46 52.2
Lsat_1_v5_gn_3_17641 Lactuca sativa HOM05D005351 ORTHO05D006542 4.1e-06 58.2 117 37.6


User provided reference genes

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