Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 2.6e-77 292.0 146 100.0
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 2.7e-58 228.8 149 81.2
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 9.6e-56 220.3 143 79.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.6e-53 212.2 143 77.6
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 2.6e-53 212.2 147 77.6
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 4.9e-52 208.0 148 78.4
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 4.9e-52 208.0 148 78.4
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 4.9e-52 208.0 141 78.7
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 1.1e-51 206.8 141 78.0
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 2.1e-50 202.6 141 73.8
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 1.8e-49 199.5 148 70.9
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 3.9e-49 198.4 142 74.6
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.9e-49 198.4 145 72.4
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 3.9e-49 198.4 140 72.9
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.1e-49 198.0 145 73.1
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 5.1e-49 198.0 142 75.4
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 5.1e-49 198.0 142 73.2
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.9e-48 196.1 145 73.1
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 3.3e-48 195.3 146 72.6
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 9.6e-48 193.7 146 71.9
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.3e-47 193.4 143 75.5
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.3e-47 193.4 143 72.0
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.3e-47 193.4 141 71.6
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 2.8e-47 192.2 143 73.4
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.8e-47 192.2 145 71.0
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 2.8e-47 192.2 149 72.5
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.8e-47 191.4 152 70.4
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 8.2e-47 190.7 147 71.4
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.1e-46 190.3 145 70.3
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.4e-46 189.9 148 70.3
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 3.1e-46 188.7 142 73.2
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.0e-46 188.3 154 68.2
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 5.3e-46 188.0 147 68.0
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 5.3e-46 188.0 129 77.5
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 5.3e-46 188.0 141 73.8
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 9.0e-46 187.2 146 67.8
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.5e-45 186.4 146 71.2
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.6e-45 185.7 143 70.6
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.6e-45 185.7 144 70.1
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 3.4e-45 185.3 144 72.2
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 1.0e-44 183.7 145 71.7
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.3e-44 183.3 149 67.8
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 1.7e-44 183.0 148 66.9
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.7e-44 183.0 144 67.4
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.7e-44 183.0 144 67.4
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.9e-44 182.2 126 78.6
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 3.8e-44 181.8 143 66.4
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.8e-44 181.8 143 66.4
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 3.8e-44 181.8 148 70.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 6.5e-44 181.0 142 70.4
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.1e-43 180.3 145 67.6
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.9e-43 179.5 145 68.3
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 2.5e-43 179.1 147 66.7
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.5e-43 179.1 144 67.4
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 3.2e-43 178.7 143 67.1
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 3.2e-43 178.7 147 66.0
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 4.2e-43 178.3 131 70.2
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 4.2e-43 178.3 130 73.1
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 5.5e-43 177.9 126 73.8
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 9.3e-43 177.2 141 71.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 9.3e-43 177.2 143 65.0
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 9.3e-43 177.2 140 65.7
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-42 176.8 125 73.6
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.2e-42 176.8 147 66.0
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.6e-42 176.4 178 57.9
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.6e-42 176.4 148 69.6
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 6.0e-42 174.5 146 65.8
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 7.9e-42 174.1 140 67.9
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.0e-41 173.7 143 67.8
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.3e-41 173.3 130 72.3
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 3.0e-41 172.2 141 63.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 3.9e-41 171.8 140 67.9
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 3.9e-41 171.8 130 71.5
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.1e-40 170.2 147 66.0
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.1e-40 170.2 145 66.9
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.5e-40 169.9 141 65.2
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.5e-40 169.9 144 61.8
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.9e-40 169.5 145 64.1
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.9e-40 169.5 130 69.2
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.5e-40 169.1 144 61.1
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 2.5e-40 169.1 143 65.7
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 3.3e-40 168.7 147 61.9
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 4.3e-40 168.3 140 65.7
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 4.3e-40 168.3 141 62.4
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 7.4e-40 167.5 141 65.2
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 9.7e-40 167.2 132 68.9
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.2e-39 166.0 146 63.7
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 2.2e-39 166.0 143 62.2
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.8e-39 165.6 134 66.4
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 6.3e-39 164.5 146 63.7
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 8.2e-39 164.1 141 64.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 8.2e-39 164.1 146 62.3
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.4e-38 162.5 140 64.3
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 5.3e-38 161.4 143 67.8
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 2.0e-37 159.5 140 65.0
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 4.5e-37 158.3 146 64.4
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.9e-35 152.9 149 61.7
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 5.5e-35 151.4 147 61.9
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.1e-34 149.4 146 56.2
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.4e-33 146.7 90 82.2
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.1e-33 144.8 146 56.2
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 5.1e-33 144.8 126 68.3
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 6.7e-33 144.4 149 57.0
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 6.7e-33 144.4 149 57.0
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 5.7e-32 141.4 154 55.2
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 1.7e-31 139.8 151 56.3
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 4.8e-31 138.3 127 62.2
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 1.4e-30 136.7 124 60.5
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.4e-30 136.7 123 57.7
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 9.1e-30 134.0 151 53.6
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 2.0e-29 132.9 151 55.6
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 3.4e-29 132.1 151 53.6
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 5.9e-29 131.3 122 61.5
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.9e-28 129.0 126 55.6
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.9e-27 126.3 136 50.0
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 2.5e-27 125.9 129 55.8
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 4.2e-27 125.2 128 57.0
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 2.6e-24 115.9 125 54.4
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 9.7e-24 114.0 135 47.4
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 6.3e-23 111.3 136 47.8
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.1e-22 110.5 90 66.7
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.5e-21 106.7 139 46.8
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 8.5e-20 100.9 100 61.0
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 3.9e-17 92.0 138 45.7
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 3.7e-15 85.5 98 56.1
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.1e-14 82.0 98 54.1
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 5.3e-14 81.6 95 55.8
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 5.9e-13 78.2 92 47.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 8.0e-10 67.8 54 55.6
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 5.7e-08 61.6 117 37.6
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 9.7e-08 60.8 75 48.0
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 2.2e-07 59.7 44 63.6


User provided reference genes

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