Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.4e-92 342.4 293 100.0
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 8.6e-80 301.2 291 89.7
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 9.8e-76 287.7 292 89.4
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.3e-75 287.3 293 85.7
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 6.4e-75 285.0 293 85.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 8.3e-75 284.6 293 86.7
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.1e-74 284.3 293 89.8
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 4.1e-74 282.3 293 87.4
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.1e-73 280.0 292 89.0
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-73 280.0 292 89.0
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 2.7e-73 279.6 292 86.3
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.5e-73 279.3 292 87.0
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.5e-73 279.3 292 88.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.5e-73 279.3 292 88.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 1.7e-72 276.9 292 88.0
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 3.9e-72 275.8 292 85.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 8.6e-72 274.6 292 86.6
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.9e-71 273.5 292 88.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 2.5e-71 273.1 292 85.3
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.3e-71 272.3 291 84.2
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 4.3e-71 272.3 293 86.7
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 9.5e-71 271.2 292 84.2
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.6e-70 270.4 292 86.3
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 2.3e-69 266.5 292 82.9
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 4.0e-69 265.8 292 85.6
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.2e-68 264.2 293 85.3
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.5e-68 263.8 292 84.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.4e-68 262.3 292 83.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.1e-66 257.7 292 82.5
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.4e-66 257.3 291 85.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.4e-66 257.3 293 84.3
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.2e-66 256.1 292 85.3
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 5.4e-66 255.4 293 82.3
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 7.1e-66 255.0 291 82.5
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.2e-65 254.2 292 82.9
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 2.1e-65 253.4 292 82.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 2.1e-65 253.4 292 82.5
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 2.7e-65 253.1 292 82.5
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.7e-65 253.1 292 82.5
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.7e-65 253.1 292 82.5
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 2.7e-65 253.1 292 82.5
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 2.7e-65 253.1 292 82.9
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 6.0e-65 251.9 291 82.1
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 7.8e-65 251.5 293 84.3
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 1.3e-64 250.8 292 82.5
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 3.0e-64 249.6 291 81.8
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 6.6e-64 248.4 293 84.6
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 6.6e-64 248.4 293 83.3
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 8.6e-64 248.1 292 81.8
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.1e-63 247.7 292 81.8
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.9e-63 246.9 293 80.5
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.5e-63 246.5 288 82.6
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.3e-63 245.7 291 81.1
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.3e-63 245.7 291 81.1
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 4.3e-63 245.7 291 81.1
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.3e-63 245.7 293 82.9
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 4.3e-63 245.7 293 82.9
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 5.6e-63 245.4 293 63.8
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 7.3e-63 245.0 293 82.6
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.6e-62 243.8 291 80.8
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 6.2e-62 241.9 292 81.5
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.0e-60 236.9 292 79.8
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 4.4e-60 235.7 293 80.5
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 7.6e-60 235.0 292 79.8
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.7e-59 233.8 293 80.2
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.9e-59 233.0 292 76.7
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.9e-59 233.0 292 76.7
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 6.4e-59 231.9 292 79.8
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 6.4e-59 231.9 292 79.8
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.4e-58 230.7 292 79.5
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 7.1e-58 228.4 292 78.4
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 9.2e-58 228.0 293 80.5
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.6e-57 227.3 292 77.4
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.6e-57 227.3 292 78.4
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.6e-57 227.3 292 78.1
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 2.1e-57 226.9 292 78.4
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.7e-57 226.5 292 78.1
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.0e-56 224.6 293 78.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.0e-56 224.6 280 82.1
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.3e-56 224.2 292 79.1
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 3.9e-56 222.6 293 79.5
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 8.7e-56 221.5 292 77.1
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.6e-54 217.2 293 77.8
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.4e-53 213.4 292 77.1
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.6e-52 209.9 292 74.7
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 5.8e-52 208.8 292 74.3
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 7.6e-52 208.4 292 70.2
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.3e-51 207.6 293 76.5
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.2e-51 206.8 292 74.7
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 7.1e-50 201.8 292 73.3
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.1e-49 200.3 292 75.3
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 6.0e-49 198.7 292 72.6
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 9.6e-47 191.4 292 71.9
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.7e-43 180.6 288 70.5
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.9e-43 179.1 290 71.4
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.4e-42 177.6 285 71.2
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 4.6e-41 172.6 259 59.8
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 3.9e-40 169.5 120 80.0
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 6.9e-37 158.7 109 79.8
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.0e-35 154.8 236 78.8
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 3.9e-32 142.9 291 65.6
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 6.7e-32 142.1 132 62.9
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.5e-31 141.0 223 82.1
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.7e-30 136.3 132 59.1
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.2e-28 131.3 290 33.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.3e-24 117.9 189 84.1
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.8e-24 117.5 193 57.0
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 3.3e-23 113.2 198 84.3
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.4e-21 107.8 123 45.5
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 3.1e-21 106.7 71 71.8
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 3.8e-19 99.8 196 80.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.4e-18 97.8 288 59.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.2e-18 96.3 288 55.9
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.6e-17 93.2 280 57.1
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 9.7e-15 85.1 49 79.6
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.2e-14 84.0 118 35.6
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 1.3e-11 74.7 119 43.7
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.2e-10 69.7 62 62.9
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 7.2e-10 68.9 38 86.8
CiPaw.05G060800 Carya illinoinensis HOM05D001557 ORTHO05D001299 1.1e-07 61.6 77 40.3
Eucgr.G00475 Eucalyptus grandis HOM05D001557 ORTHO05D001299 5.7e-07 59.3 102 30.4
TAR376G0325 Trochodendron aralioides HOM05D001557 ORTHO05D001299 1.3e-06 58.2 105 29.5
Nn1g05028 Nelumbo nucifera HOM05D001557 ORTHO05D001299 2.8e-06 57.0 77 33.8
MBI16_g31216_MAGBIO Magnolia biondii HOM05D001557 ORTHO05D001299 8.2e-06 55.5 77 33.8


User provided reference genes

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