Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 0.0e+00 1744.6 893 100.0
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1252.3 878 74.3
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 0.0e+00 1224.2 896 71.2
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 0.0e+00 1217.2 875 71.9
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 0.0e+00 1208.7 868 72.1
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 0.0e+00 1179.9 933 66.1
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 0.0e+00 1152.5 874 68.4
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 0.0e+00 1151.7 879 67.9
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 0.0e+00 1132.1 879 67.9
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 0.0e+00 1129.0 885 65.5
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 0.0e+00 1124.8 881 66.9
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 0.0e+00 1121.7 837 68.8
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 0.0e+00 1113.6 855 67.4
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 0.0e+00 1113.2 881 65.2
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 0.0e+00 1112.4 877 65.8
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 0.0e+00 1109.4 880 65.9
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 0.0e+00 1104.4 878 65.7
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1102.0 880 65.8
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 0.0e+00 1099.3 884 64.9
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 0.0e+00 1086.2 896 63.7
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 0.0e+00 1079.7 881 63.7
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1079.3 895 64.6
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.5e-310 1068.1 881 64.5
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 7.9e-310 1067.0 880 64.2
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 2.1e-307 1058.9 878 62.8
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 2.8e-307 1058.5 875 62.9
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 1.3e-304 1049.7 881 62.4
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 1.7e-304 1049.3 874 61.9
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 2.2e-304 1048.9 863 64.3
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 6.5e-304 1047.3 875 62.6
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 5.5e-303 1044.3 931 61.3
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 2.7e-302 1042.0 698 75.8
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 2.2e-299 1032.3 874 61.7
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.4e-297 1025.0 875 61.3
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 1.4e-295 1019.6 868 61.6
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 6.1e-294 1014.2 885 60.7
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 1.8e-293 1012.7 874 61.4
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 3.3e-292 1008.4 884 60.1
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 1.3e-291 1006.5 897 60.1
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 2.8e-291 1005.4 880 59.2
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 4.5e-289 998.0 885 58.1
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 2.0e-284 982.6 874 59.5
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 5.7e-284 981.1 749 67.4
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.7e-283 979.5 889 59.2
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 1.1e-282 976.9 878 57.2
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 2.6e-281 972.2 890 59.1
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 9.4e-279 963.8 963 56.8
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 2.7e-278 962.2 881 57.7
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.4e-277 959.9 879 57.5
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 5.2e-277 958.0 879 57.5
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 6.7e-277 957.6 837 57.9
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 9.1e-274 947.2 738 67.2
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 1.3e-272 943.3 878 56.4
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 3.6e-270 935.3 878 55.4
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 1.8e-269 932.9 874 57.3
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.2e-265 920.2 881 55.2
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 4.7e-262 908.3 918 56.2
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 1.4e-261 906.7 868 55.2
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 6.8e-261 904.4 867 54.8
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 6.8e-261 904.4 875 54.3
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 1.2e-260 903.7 777 59.6
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 2.8e-259 899.0 880 54.3
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 5.4e-258 894.8 871 54.6
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 3.5e-257 892.1 880 53.8
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 7.8e-249 864.4 871 53.5
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 1.5e-247 860.1 876 52.6
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 3.4e-244 849.0 761 59.4
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 4.4e-244 848.6 882 51.7
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 4.4e-244 848.6 873 52.5
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 5.8e-244 848.2 838 53.7
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 2.9e-243 845.9 851 52.8
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 3.9e-240 835.5 878 52.1
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 1.1e-234 817.4 894 51.3
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 6.8e-229 798.1 841 52.1
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 8.4e-219 764.6 906 48.9
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.4e-218 763.8 880 49.1
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 5.6e-215 751.9 651 60.2
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 1.6e-214 750.4 652 63.0
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.1e-202 711.1 964 43.2
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 1.4e-197 694.1 497 70.4
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 2.3e-192 676.8 932 43.9
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 3.0e-192 676.4 844 46.0
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 5.0e-171 605.9 494 62.6
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 9.7e-167 591.7 829 41.9
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 1.7e-163 580.9 842 40.9
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 8.8e-160 568.5 541 56.7
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 1.0e-155 555.1 909 37.8
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.2e-148 531.6 480 61.7
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 2.5e-138 497.3 426 62.2
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 8.0e-137 492.3 415 62.2
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 4.0e-128 463.4 539 49.9
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 6.8e-128 462.6 832 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.9e-122 444.5 642 41.9
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.7e-107 394.8 408 51.7
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 3.1e-104 384.0 266 74.8
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 1.4e-101 375.2 357 55.5
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 4.3e-98 363.6 321 60.1
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 9.9e-95 352.4 370 51.6
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.8e-89 333.6 372 50.5
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 3.4e-87 327.4 425 44.0
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 4.5e-63 247.3 537 32.2
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.7e-57 227.6 253 53.0
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 3.7e-57 227.6 253 53.0
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 7.2e-53 213.4 182 56.0
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.7e-52 210.7 252 49.2
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 1.0e-46 193.0 204 52.9
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 1.0e-46 193.0 204 52.9
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.0e-46 193.0 173 53.8
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 4.0e-43 181.0 167 52.1
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 7.5e-42 176.8 213 44.1
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 7.2e-37 160.2 166 52.4
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 3.6e-36 157.9 248 43.5
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.3e-30 139.4 177 44.1
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 5.0e-30 137.5 93 73.1
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.1e-29 136.3 92 73.9
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 5.5e-29 134.0 84 77.4
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 1.2e-28 132.9 185 42.7
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 3.6e-28 131.3 82 78.0
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 2.0e-26 125.6 110 57.3
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 5.7e-26 124.0 118 52.5
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 8.3e-25 120.2 95 62.1
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.2e-23 116.3 201 41.3
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 1.0e-22 113.2 115 57.4
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 1.7e-22 112.5 107 55.1
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 5.0e-22 110.9 95 60.0
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 2.5e-21 108.6 110 53.6
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 2.1e-20 105.5 109 56.9
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.8e-19 102.4 82 59.8
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 1.2e-18 99.8 64 76.6
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 5.7e-18 97.4 75 62.7
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 4.6e-15 87.8 109 48.6
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.0e-14 86.7 109 49.5
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 5.0e-14 84.3 106 37.7
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 4.7e-12 77.8 64 57.8
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 6.2e-12 77.4 63 58.7
CDE02G4328 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.3e-11 75.5 78 48.7
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.0e-10 72.4 82 42.7
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.7e-09 69.3 72 45.8
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 3.7e-09 68.2 64 46.9
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 3.7e-09 68.2 65 53.8
SEGI_24122 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.3e-06 59.7 72 40.3
Hund02002 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.7e-06 59.3 60 46.7


User provided reference genes

Program Settings