Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40763 Davidia involucrata HOM05D000355 ORTHO05D000227 3.4e-211 738.0 366 100.0
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 1.2e-33 148.3 168 53.6
QL08p009943 Quercus lobata HOM05D000355 ORTHO05D000227 3.8e-16 90.1 70 64.3
Rhsim06G0218100 Rhododendron simsii HOM05D000355 ORTHO05D000227 8.4e-16 89.0 75 65.3
GSVIVG01037661001 Vitis vinifera HOM05D000355 ORTHO05D000227 1.1e-15 88.6 76 60.5
Prupe.4G214900 Prunus persica HOM05D000355 ORTHO05D000227 5.4e-15 86.3 90 50.0
CSS0004295 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 9.3e-15 85.5 85 57.6
Solyc07g064650.3 Solanum lycopersicum HOM05D000355 ORTHO05D000227 2.1e-14 84.3 72 65.3
Sopen07g032850 Solanum pennellii HOM05D000355 ORTHO05D000227 2.1e-14 84.3 71 66.2
RcHm_v2.0_Chr5g0040191 Rosa chinensis HOM05D000355 ORTHO05D000227 3.5e-14 83.6 86 53.5
CSS0044358 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 1.0e-13 82.0 60 70.0
Nitab4.5_0003495g0040 Nicotiana tabacum HOM05D000355 ORTHO05D000227 8.7e-13 79.0 63 63.5
PGSC0003DMG400022315 Solanum tuberosum HOM05D000355 ORTHO05D000227 8.7e-13 79.0 63 63.5
Cfa020334 Carpinus fangiana HOM05D000355 ORTHO05D000227 1.5e-12 78.2 83 54.2
CiPaw.09G092300 Carya illinoinensis HOM05D000355 ORTHO05D000227 2.5e-12 77.4 87 50.6
Haze_09685 Corylus avellana HOM05D000355 ORTHO05D000227 2.5e-12 77.4 73 56.2
DCAR_022567 Daucus carota HOM05D000355 ORTHO05D000227 3.3e-12 77.0 65 63.1
Nitab4.5_0007360g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 4.3e-12 76.6 52 67.3
CAN.G337.139 Capsicum annuum HOM05D000355 ORTHO05D000227 5.6e-12 76.3 64 60.9
vmacro09705 Vaccinium macrocarpon HOM05D000355 ORTHO05D000227 7.3e-12 75.9 89 50.6
Nn1g03507 Nelumbo nucifera HOM05D000355 ORTHO05D000227 1.3e-11 75.1 72 61.1
MD03G1199600 Malus domestica HOM05D000355 ORTHO05D000227 2.1e-11 74.3 74 52.7
RcHm_v2.0_Chr5g0002931 Rosa chinensis HOM05D000355 ORTHO05D000227 2.1e-11 74.3 77 54.5
MSTRG.6925 Avicennia marina HOM05D000355 ORTHO05D000227 2.8e-11 73.9 76 53.9
Cc05_g13870 Coffea canephora HOM05D000355 ORTHO05D000227 2.8e-11 73.9 54 68.5
MD11G1216500 Malus domestica HOM05D000355 ORTHO05D000227 2.8e-11 73.9 80 51.2
Peaxi162Scf00235g00024 Petunia axillaris HOM05D000355 ORTHO05D000227 2.8e-11 73.9 77 51.9
FAN21G0059 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.8e-11 73.2 91 47.3
FAN11G1364 Fragaria x ananassa HOM05D000355 ORTHO05D000227 6.2e-11 72.8 78 50.0
FAN25G2862 Fragaria x ananassa HOM05D000355 ORTHO05D000227 6.2e-11 72.8 78 50.0
CiPaw.11G190500 Carya illinoinensis HOM05D000355 ORTHO05D000227 8.1e-11 72.4 75 50.7
TAR624G0087 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.4e-10 71.6 71 57.7
Lj6g0010284 Lotus japonicus HOM05D000355 ORTHO05D000227 1.8e-10 71.2 78 50.0
FvH4_3g22890 Fragaria vesca HOM05D000355 ORTHO05D000227 2.4e-10 70.9 82 50.0
MSTRG.15144 Avicennia marina HOM05D000355 ORTHO05D000227 5.3e-10 69.7 87 49.4
Prupe.4G020000 Prunus persica HOM05D000316 ORTHO05D000374 9.0e-10 68.9 64 59.4
Peaxi162Scf00834g00013 Petunia axillaris HOM05D000355 ORTHO05D000227 1.2e-09 68.6 89 48.3
Oeu062588.1 Olea europaea HOM05D000355 ORTHO05D000227 1.5e-09 68.2 105 40.0
CiPaw.12G130300 Carya illinoinensis HOM05D000355 ORTHO05D000227 2.0e-09 67.8 78 46.2
Nn1g07141 Nelumbo nucifera HOM05D000355 ORTHO05D000227 2.0e-09 67.8 66 57.6
Aqoxy1G02120 Aquilegia oxysepala HOM05D000355 ORTHO05D000227 3.4e-09 67.0 63 61.9
Lalb_Chr15g0081331 Lupinus albus HOM05D000355 ORTHO05D000227 3.4e-09 67.0 67 55.2
Lalb_Chr10g0107031 Lupinus albus HOM05D000355 ORTHO05D000227 4.5e-09 66.6 79 51.9
TAR626G1504 Trochodendron aralioides HOM05D000355 ORTHO05D000227 4.5e-09 66.6 81 50.6
Hma1.2p1_0738F.1_g211100 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 5.8e-09 66.2 83 49.4
Hma1.2p1_2518F.1_g323770 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 5.8e-09 66.2 83 49.4
Thecc.07G035000 Theobroma cacao HOM05D000355 ORTHO05D000227 9.9e-09 65.5 99 45.5
Manes.17G038980 Manihot esculenta HOM05D000355 ORTHO05D000227 1.3e-08 65.1 88 48.9
Thecc.06G221000 Theobroma cacao HOM05D000355 ORTHO05D000227 1.3e-08 65.1 112 37.5
Gohir.A09G068600 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.7e-08 64.7 76 46.1
TAR627G0409 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.7e-08 64.7 62 58.1
Duzib192G0607 Durio zibethinus HOM05D000355 ORTHO05D000227 2.9e-08 63.9 67 49.3
Gohir.D09G068800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.9e-08 63.9 83 44.6
Glyma.18G095800 Glycine max HOM05D000355 ORTHO05D000227 3.8e-08 63.5 91 42.9
Gohir.A09G068650 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.8e-08 63.5 91 45.1
Gorai.006G082900 Gossypium raimondii HOM05D000355 ORTHO05D000227 3.8e-08 63.5 83 44.6
FAN16G3532 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.9e-08 63.2 72 50.0
HanXRQChr11g0337281 Helianthus annuus HOM05D000355 ORTHO05D000227 6.4e-08 62.8 60 58.3
Duzib160G0794 Durio zibethinus HOM05D000355 ORTHO05D000227 1.1e-07 62.0 75 49.3
Phvul.006G044700 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 1.1e-07 62.0 80 45.0
Duzib235G0910 Durio zibethinus HOM05D000355 ORTHO05D000227 1.4e-07 61.6 88 47.7
Manes.03G130151 Manihot esculenta HOM05D000355 ORTHO05D000227 1.4e-07 61.6 79 49.4
TWI63G0422 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 1.4e-07 61.6 109 40.4
VMungo0647G1125 Vigna mungo HOM05D000355 ORTHO05D000227 1.4e-07 61.6 68 48.5
Duzib170G0673 Durio zibethinus HOM05D000355 ORTHO05D000227 1.9e-07 61.2 82 48.8
Gorai.009G178800 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.9e-07 61.2 92 41.3
Nitab4.5_0004829g0040 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.9e-07 61.2 46 65.2
RhsimUnG0249700 Rhododendron simsii HOM05D000355 ORTHO05D000227 1.9e-07 61.2 63 50.8
Glyma.08G317200 Glycine max HOM05D000355 ORTHO05D000227 2.4e-07 60.8 84 42.9
Gohir.D05G173600 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.4e-07 60.8 92 41.3
Phvul.004G086800 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 2.4e-07 60.8 96 40.6
QL05p073075 Quercus lobata HOM05D000355 ORTHO05D000227 2.4e-07 60.8 59 55.9
EL10Ac4g07797 Beta vulgaris HOM05D000355 ORTHO05D000227 3.2e-07 60.5 46 63.0
Cfa000216 Carpinus fangiana HOM05D000355 ORTHO05D000227 4.2e-07 60.1 57 56.1
VMungo0540G2443 Vigna mungo HOM05D000355 ORTHO05D000227 4.2e-07 60.1 79 44.3
Glyma.02G291700 Glycine max HOM05D000355 ORTHO05D000227 5.4e-07 59.7 77 50.6
Gohir.D09G068900 Gossypium hirsutum HOM05D000355 ORTHO05D000227 5.4e-07 59.7 87 43.7
Gorai.006G083100 Gossypium raimondii HOM05D000355 ORTHO05D000227 5.4e-07 59.7 87 43.7
SHI26591 Sapria himalayana HOM05D000355 ORTHO05D000227 5.4e-07 59.7 65 52.3
Oeu041815.1 Olea europaea HOM05D000355 ORTHO05D000227 7.1e-07 59.3 62 51.6
Glyma.14G023100 Glycine max HOM05D000355 ORTHO05D000227 1.2e-06 58.5 86 44.2
Gohir.A05G170500 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.6e-06 58.2 92 41.3
Medtr3g052330 Medicago truncatula HOM05D000355 ORTHO05D000227 1.6e-06 58.2 69 46.4
TPR.G33755 Trifolium pratense HOM05D000355 ORTHO05D000227 1.6e-06 58.2 75 48.0
CSS0039394 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.1e-06 57.8 97 44.3
Manes.16G006800 Manihot esculenta HOM05D000355 ORTHO05D000227 2.1e-06 57.8 86 48.8
LjContig00272g0015424 Lotus japonicus HOM05D000355 ORTHO05D000227 2.7e-06 57.4 65 50.8
ATR0794G099 Amborella trichopoda HOM05D000355 ORTHO05D000227 6.0e-06 56.2 77 44.2
ECA236G2721 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.0e-06 56.2 59 52.5
Phvul.008G268000 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 7.9e-06 55.8 76 44.7
Sc16g0005960 Simmondsia chinensis HOM05D000355 ORTHO05D000227 7.9e-06 55.8 48 52.1


User provided reference genes

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