Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.9e-194 681.8 366 100.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 3.7e-165 585.1 388 83.5
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.7e-160 568.2 390 80.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.0e-159 567.0 383 82.0
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 9.8e-158 560.5 405 78.3
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.3e-157 560.1 388 79.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.0e-156 554.3 388 78.1
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.5e-153 546.6 388 78.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.5e-153 546.6 385 81.6
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.9e-153 546.2 390 78.5
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.3e-153 545.4 385 76.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 5.6e-153 544.7 388 77.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 5.6e-153 544.7 388 77.6
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 2.1e-152 542.7 388 77.3
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.9e-151 537.3 383 80.2
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.9e-149 532.3 390 76.7
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 3.7e-149 531.9 390 75.9
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.4e-148 530.0 386 76.2
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.4e-148 529.3 385 76.4
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 4.1e-148 528.5 389 78.4
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 4.1e-148 528.5 388 76.5
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 3.5e-147 525.4 417 74.3
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.0e-146 523.9 385 77.1
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.0e-146 523.9 380 78.2
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.3e-146 523.5 388 76.0
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.7e-146 523.1 387 76.2
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.7e-146 523.1 429 69.2
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.0e-146 522.3 387 74.4
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.6e-146 520.8 388 76.3
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.8e-144 515.8 388 72.9
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.4e-143 513.5 383 74.7
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.2e-143 511.5 388 77.1
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 8.9e-143 510.8 390 76.2
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.0e-142 509.6 382 73.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-142 509.6 383 75.2
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 5.8e-142 508.1 389 72.8
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.7e-141 506.5 388 71.1
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 6.4e-141 504.6 384 74.7
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.4e-140 503.4 380 76.8
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.9e-140 503.1 380 76.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.2e-140 500.7 385 74.0
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.6e-139 500.0 383 71.0
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.6e-139 500.0 369 77.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.6e-139 500.0 379 75.2
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.7e-139 499.2 400 72.0
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.7e-139 499.2 380 75.3
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.5e-139 498.8 385 70.4
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.0e-139 498.0 380 75.0
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 7.8e-139 497.7 377 74.8
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.0e-138 497.3 389 73.5
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.3e-138 496.1 388 76.3
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 2.3e-138 496.1 389 69.4
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.9e-138 495.4 384 72.7
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 3.9e-138 495.4 395 70.4
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 6.6e-138 494.6 379 76.8
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 6.6e-138 494.6 389 69.7
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.9e-137 493.0 389 68.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.9e-137 493.0 382 69.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.6e-137 491.5 384 72.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 5.6e-137 491.5 380 74.2
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 5.6e-137 491.5 380 74.2
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 5.6e-137 491.5 380 71.6
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 9.6e-137 490.7 372 75.8
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 9.6e-137 490.7 390 68.2
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.2e-136 490.3 380 73.9
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.2e-136 490.3 380 73.9
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.2e-136 490.3 380 73.9
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.1e-136 489.6 374 71.7
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.6e-136 488.8 371 70.6
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 8.1e-136 487.6 383 75.2
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-135 487.3 384 72.1
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.8e-135 486.5 381 73.5
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.8e-135 486.5 381 73.2
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 3.1e-135 485.7 380 73.9
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.0e-135 485.3 389 69.7
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 8.9e-135 484.2 381 73.2
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 8.9e-135 484.2 379 72.8
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.5e-134 483.4 398 69.1
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.6e-134 482.6 379 73.1
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.6e-134 482.6 378 69.8
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 9.9e-134 480.7 380 71.6
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 2.2e-133 479.6 389 68.9
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 2.9e-133 479.2 397 69.5
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.9e-133 478.4 406 67.5
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-132 477.2 419 67.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.4e-132 476.9 388 68.6
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.2e-132 475.7 382 68.1
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.2e-132 475.3 379 72.8
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 4.2e-132 475.3 384 69.0
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.2e-132 475.3 388 68.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 5.4e-132 474.9 380 69.5
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 5.4e-132 474.9 380 69.7
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.2e-131 473.8 382 67.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.6e-131 473.4 380 70.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.3e-130 469.5 478 62.6
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.9e-129 466.5 388 67.8
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 1.3e-128 463.8 382 66.8
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-128 463.0 371 73.0
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.8e-128 462.6 356 70.8
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 4.8e-128 461.8 362 71.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 6.2e-128 461.5 321 79.1
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 9.0e-127 457.6 380 66.3
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.9e-125 452.6 424 61.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.8e-125 452.2 382 66.8
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.1e-124 450.7 369 66.7
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.6e-123 445.3 385 67.0
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 4.6e-123 445.3 461 57.5
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.1e-121 440.7 441 63.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.3e-121 439.1 396 65.7
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 6.2e-120 434.9 367 65.9
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 4.0e-119 432.2 390 62.3
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 9.0e-119 431.0 335 76.4
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.1e-116 424.1 385 64.4
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 7.9e-115 417.9 393 65.1
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 5.6e-113 411.8 377 64.2
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 3.7e-112 409.1 365 65.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 8.4e-109 397.9 373 59.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.4e-108 397.1 381 58.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.1e-107 393.3 348 64.1
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 4.3e-105 385.6 368 59.0
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.7e-101 373.6 336 69.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.8e-101 372.5 377 59.9
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.7e-98 361.7 375 55.2
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.8e-95 353.6 384 52.9
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.8e-88 328.9 304 62.5
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.2e-86 324.3 383 54.8
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 9.4e-84 314.7 297 62.3
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.3e-56 224.6 375 36.5
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.2e-47 193.4 391 35.3
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.3e-37 160.6 174 55.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.7e-30 137.1 84 82.1
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 8.6e-29 132.1 163 55.8
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 6.2e-19 99.4 46 100.0
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 6.2e-19 99.4 46 100.0
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.1e-18 98.6 55 87.3
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 9.0e-10 68.9 53 71.7


User provided reference genes

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