Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 4.6e-230 800.8 394 100.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 6.0e-44 182.6 158 65.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 7.8e-44 182.2 158 65.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.9e-42 177.6 158 63.9
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.5e-42 177.2 158 64.6
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 7.3e-42 175.6 180 47.8
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-41 174.9 158 63.3
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.2e-41 174.9 158 61.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.1e-41 174.1 158 63.3
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.8e-41 173.7 158 62.7
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.8e-41 173.7 158 60.8
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.8e-41 173.7 158 60.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.8e-41 173.7 158 60.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.6e-41 173.3 158 63.9
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 3.6e-41 173.3 158 62.7
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.6e-41 173.3 147 64.6
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 4.7e-41 172.9 158 62.0
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 4.7e-41 172.9 158 62.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.2e-41 172.6 158 60.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.2e-41 172.6 158 60.1
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 8.1e-41 172.2 158 61.4
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.4e-40 171.4 158 62.0
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.4e-40 171.4 158 62.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.8e-40 171.0 158 60.1
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.8e-40 171.0 123 74.8
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.4e-40 170.6 158 62.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.1e-40 170.2 158 61.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.1e-40 170.2 158 61.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.3e-40 169.5 158 62.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 9.0e-40 168.7 158 60.8
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 9.0e-40 168.7 158 60.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 9.0e-40 168.7 158 61.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 9.0e-40 168.7 158 63.3
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 9.0e-40 168.7 158 60.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.2e-39 168.3 158 61.4
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-39 168.3 158 63.9
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-39 168.3 158 63.9
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.5e-39 167.9 167 58.7
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.5e-39 167.9 158 62.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.5e-39 167.9 166 58.4
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.5e-39 167.9 158 60.8
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.0e-39 167.5 166 58.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.0e-39 167.5 158 60.8
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.0e-39 167.5 153 62.7
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.6e-39 167.2 158 59.5
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.6e-39 167.2 158 62.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.6e-39 167.2 158 61.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-39 166.4 158 60.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-39 166.4 158 60.8
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.4e-39 166.4 182 54.9
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 5.8e-39 166.0 158 61.4
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 7.6e-39 165.6 158 61.4
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 9.9e-39 165.2 158 58.9
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.3e-38 164.9 157 59.2
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.3e-38 164.9 158 60.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.2e-38 164.1 141 66.7
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.2e-38 164.1 158 60.8
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.9e-38 163.7 158 58.9
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.9e-38 163.7 158 60.1
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.8e-38 163.3 158 60.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.8e-38 163.3 158 60.1
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 3.8e-38 163.3 158 60.1
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 3.8e-38 163.3 158 58.2
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.9e-38 162.9 158 60.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 4.9e-38 162.9 205 50.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 4.9e-38 162.9 158 58.2
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-38 162.9 158 60.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 6.4e-38 162.5 158 60.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 6.4e-38 162.5 158 60.1
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.1e-37 161.8 158 59.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.4e-37 161.4 182 53.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.2e-37 159.8 159 56.6
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.4e-37 159.5 158 57.6
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.4e-37 159.5 158 57.6
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 7.1e-37 159.1 158 57.0
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 7.1e-37 159.1 158 59.5
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 9.3e-37 158.7 159 56.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 9.3e-37 158.7 158 58.9
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.2e-36 158.3 179 53.1
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.7e-36 157.1 158 58.9
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.7e-36 157.1 158 58.2
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.3e-35 154.8 163 55.2
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.3e-35 154.8 157 58.6
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.3e-35 154.8 158 56.3
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-35 154.8 159 54.1
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.7e-35 154.5 158 55.7
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.3e-35 154.1 158 57.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.0e-35 153.7 158 55.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 4.3e-34 149.8 158 55.1
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 5.6e-34 149.4 159 51.6
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.6e-33 147.9 159 56.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.8e-33 147.1 93 82.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.6e-33 146.7 153 54.2
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 4.0e-32 143.3 153 56.2
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 5.3e-32 142.9 130 59.2
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.2e-31 141.7 158 55.1
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.6e-31 140.6 158 53.2
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 7.6e-31 139.0 132 61.4
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 7.6e-31 139.0 158 54.4
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 9.9e-31 138.7 167 49.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.9e-30 137.1 158 49.4
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 6.4e-30 136.0 126 62.7
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 5.4e-29 132.9 90 73.3
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.0e-27 128.6 87 73.6
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 3.3e-26 123.6 158 48.1
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 4.5e-23 113.2 136 52.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.3e-22 111.7 102 59.8
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.9e-22 109.8 66 86.4
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.3e-19 101.7 132 47.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 3.0e-19 100.5 116 52.6
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.7e-19 99.4 61 86.9
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 8.7e-19 99.0 157 40.1
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.3e-18 97.1 113 50.4
Atru.chr2.2937 Acer truncatum HOM05D002077 ORTHO05D000818 6.2e-17 92.8 123 35.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.0e-15 87.8 113 45.1
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 4.5e-15 86.7 152 37.5
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 7.6e-15 85.9 99 41.4
COL.COLO4_09460 Corchorus olitorius HOM05D036706 ORTHO05D000818 1.3e-14 85.1 101 40.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 2.9e-14 84.0 122 45.1
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 4.2e-13 80.1 44 84.1
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-12 78.6 45 80.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.2e-12 78.6 42 85.7
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 3.5e-12 77.0 204 30.9
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.8e-11 74.7 92 44.6
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.3e-11 74.3 42 88.1
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 4.3e-10 70.1 48 68.8
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 7.4e-10 69.3 152 27.6
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 6.3e-09 66.2 198 27.8
Aqoxy2G00214 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.4e-08 64.3 163 27.0
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.1e-08 63.9 93 45.2
COL.COLO4_32276 Corchorus olitorius HOM05D037256 ORTHO05D000818 4.1e-08 63.5 115 32.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 2.0e-07 61.2 46 69.6
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.6e-07 60.8 103 35.9
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 3.4e-07 60.5 70 40.0
COL.COLO4_16618 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.7e-06 58.2 139 25.9
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 3.8e-06 57.0 76 38.2


User provided reference genes

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