Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.0e-174 616.7 316 100.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 3.5e-135 485.3 313 83.4
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 5.2e-115 418.3 283 78.4
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 4.7e-108 395.2 287 75.3
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 7.5e-106 387.9 284 74.3
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.5e-101 372.9 284 71.5
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.3e-101 372.5 283 72.4
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 6.2e-100 368.2 282 69.1
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.6e-98 362.8 283 67.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.3e-97 360.5 283 70.7
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 6.4e-97 358.2 284 69.4
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 4.1e-96 355.5 303 67.3
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.6e-95 352.1 290 70.0
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 5.1e-94 348.6 284 67.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.5e-93 347.1 281 67.6
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.6e-93 345.1 272 70.6
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.1e-92 343.2 283 67.8
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 4.7e-92 342.0 283 68.6
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 4.7e-92 342.0 294 63.3
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 8.1e-92 341.3 288 67.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 5.2e-91 338.6 278 65.1
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.8e-91 338.2 290 65.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 6.8e-91 338.2 282 66.3
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 6.8e-91 338.2 272 70.6
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 8.9e-91 337.8 290 66.2
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.0e-90 336.7 296 65.9
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.0e-90 336.7 285 67.0
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.6e-90 336.3 306 62.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.8e-90 335.1 285 66.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 9.9e-90 334.3 258 69.4
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 9.9e-90 334.3 273 70.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.9e-90 334.3 287 65.5
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.9e-89 332.8 298 61.1
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.8e-89 332.4 283 66.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 4.9e-89 332.0 283 62.5
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.1e-87 326.6 288 65.3
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.0e-86 324.3 288 65.3
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.3e-86 323.9 288 62.8
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.3e-86 323.2 281 65.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 3.0e-86 322.8 289 63.7
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 3.0e-86 322.8 284 65.8
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 3.9e-86 322.4 271 67.2
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 8.7e-86 321.2 284 65.5
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.1e-85 320.9 284 63.0
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.5e-85 320.5 286 61.9
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 4.3e-85 318.9 265 66.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.6e-85 318.5 306 60.8
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 7.3e-85 318.2 289 62.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-84 316.6 344 54.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 2.1e-84 316.6 286 63.3
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.1e-83 314.3 295 61.7
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 2.4e-83 313.2 289 63.7
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.0e-83 311.2 285 60.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.0e-82 310.1 277 65.0
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 7.6e-82 308.1 381 50.4
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 9.9e-82 307.8 288 62.5
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 3.2e-80 302.8 274 61.3
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 5.4e-80 302.0 278 63.3
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-78 297.4 325 55.1
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.3e-78 296.6 283 59.0
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 6.6e-78 295.0 284 59.5
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 8.7e-78 294.7 284 59.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.5e-77 293.9 285 58.2
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.3e-77 292.4 284 58.1
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 9.6e-77 291.2 315 54.3
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-74 283.5 295 57.3
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 2.2e-73 280.0 266 60.5
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.9e-73 279.6 299 59.2
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.9e-73 279.6 269 60.6
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.4e-73 278.5 297 59.3
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 2.1e-71 273.5 286 57.0
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-71 273.1 272 57.7
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 4.6e-71 272.3 203 73.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 7.9e-71 271.6 281 56.2
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.0e-70 271.2 265 60.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 5.1e-70 268.9 282 56.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.5e-69 267.3 265 59.6
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.5e-69 267.3 265 59.6
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.9e-69 266.9 264 58.3
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.9e-69 266.9 239 62.8
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.9e-69 266.9 299 52.2
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.5e-69 266.5 270 57.4
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.3e-69 266.2 261 59.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 4.3e-69 265.8 284 58.8
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 4.3e-69 265.8 294 54.4
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.6e-68 263.8 189 72.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.7e-68 262.7 283 55.8
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.7e-68 262.7 283 55.8
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.4e-67 260.8 282 55.7
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.1e-67 259.6 283 55.5
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 4.0e-67 259.2 254 61.4
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.3e-67 258.8 283 56.5
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.5e-66 257.3 265 58.1
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-66 257.3 282 54.6
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.0e-65 254.6 281 56.2
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.0e-65 254.6 237 61.2
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.3e-65 254.2 281 56.2
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.3e-65 254.2 272 55.9
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.2e-65 253.4 281 56.2
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.2e-65 253.4 281 56.2
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.2e-65 253.4 286 55.6
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.2e-65 253.4 232 61.6
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-64 250.8 180 73.3
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.5e-64 250.0 250 58.8
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 7.1e-64 248.4 296 53.7
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 9.3e-64 248.1 232 61.2
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-63 247.7 283 52.7
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.5e-63 246.1 282 52.5
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.3e-62 243.4 253 58.1
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.9e-61 240.4 198 65.2
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.0e-54 216.5 272 50.4
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.9e-54 216.1 199 61.3
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 6.3e-52 208.8 225 52.9
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.4e-51 207.6 189 62.4
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 3.8e-49 199.5 146 75.3
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.1e-48 198.0 167 65.3
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.9e-48 197.2 279 47.0
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.4e-46 191.0 155 67.1
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.1e-43 181.4 257 45.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 3.1e-43 179.9 159 61.6
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 3.1e-43 179.9 131 76.3
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.5e-42 177.6 285 42.8
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 2.6e-42 176.8 189 54.5
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.1e-40 171.4 235 49.8
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 6.7e-38 162.2 155 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.3e-36 157.9 247 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 8.2e-36 155.2 252 42.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-34 150.6 150 54.0
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 4.5e-34 149.4 157 54.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.9e-33 146.7 257 40.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 6.5e-33 145.6 161 55.9
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.1e-29 134.8 132 56.8
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 5.7e-29 132.5 153 54.2
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.3e-28 131.3 292 38.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.7e-28 131.0 167 46.1
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.7e-28 129.8 190 45.3
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.6e-26 123.6 218 42.7
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.9e-25 120.2 67 83.6
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.0e-25 119.4 74 79.7
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 5.0e-25 119.4 121 55.4
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-24 118.2 67 82.1
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.1e-23 114.0 67 76.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.0e-22 109.8 106 53.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.0e-21 107.5 128 44.5
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.8e-19 100.9 157 38.9
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-18 98.2 83 63.9
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-18 98.2 95 54.7
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.5e-18 96.7 83 62.7
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.2e-17 94.0 82 59.8
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.9e-17 93.6 108 48.1
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.6e-15 87.8 86 58.1
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.1e-15 85.9 86 57.0
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.2e-14 82.8 71 64.8
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 3.5e-10 70.1 100 38.0
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.0e-09 68.6 175 31.4
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 3.8e-09 66.6 85 52.9
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.6e-07 61.2 61 59.0
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.1e-07 60.8 74 51.4


User provided reference genes

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