Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 7.2e-159 563.9 298 100.0
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 7.1e-98 361.3 301 66.8
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.8e-93 346.7 295 65.1
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 2.8e-86 322.8 244 68.4
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 1.8e-85 320.1 296 61.1
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.1e-82 310.8 293 60.4
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 8.2e-78 294.7 254 63.4
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 1.4e-77 293.9 272 62.1
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 3.4e-76 289.3 239 67.8
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 2.2e-75 286.6 292 55.1
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.2e-75 286.6 287 56.4
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 6.5e-75 285.0 287 55.4
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.4e-74 283.9 295 54.9
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 5.5e-74 282.0 296 54.7
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 5.1e-72 275.4 297 55.2
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 6.7e-72 275.0 293 55.6
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 8.8e-72 274.6 286 55.9
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 5.7e-71 271.9 289 54.7
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 7.4e-71 271.6 293 52.6
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 8.2e-70 268.1 288 52.4
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.8e-69 266.9 232 61.6
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.2e-68 264.2 220 63.2
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.6e-68 263.1 287 55.7
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 8.5e-67 258.1 300 52.0
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 3.2e-66 256.1 293 53.2
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 3.2e-66 256.1 297 50.8
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 3.2e-66 256.1 297 50.8
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 4.2e-66 255.8 294 50.3
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 6.1e-65 251.9 289 51.6
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 6.1e-65 251.9 296 49.7
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 3.9e-64 249.2 262 53.1
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.7e-64 248.4 287 50.9
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 8.8e-64 248.1 271 50.6
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 2.0e-63 246.9 297 47.5
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.6e-63 246.5 293 49.1
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 5.7e-63 245.4 286 51.4
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 7.4e-63 245.0 179 70.9
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.1e-61 241.1 286 50.0
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 2.4e-61 240.0 285 49.5
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 5.3e-61 238.8 286 49.3
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 9.1e-61 238.0 292 49.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.0e-60 236.9 251 52.6
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.6e-60 236.5 274 50.4
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 4.5e-60 235.7 248 52.4
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 1.0e-59 234.6 289 49.5
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 3.8e-59 232.6 291 46.7
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 8.5e-59 231.5 251 51.8
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.5e-58 230.7 235 55.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.5e-58 230.7 275 49.5
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.7e-57 226.5 301 49.2
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 4.7e-57 225.7 290 47.6
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 8.0e-57 224.9 283 47.3
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 6.7e-56 221.9 262 48.1
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 4.4e-55 219.2 273 48.0
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 4.4e-55 219.2 273 48.4
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 5.7e-55 218.8 296 48.6
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 2.2e-54 216.9 294 46.3
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 6.3e-54 215.3 292 45.5
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 3.1e-53 213.0 287 47.7
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 7.0e-53 211.8 269 48.0
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 3.5e-52 209.5 292 44.9
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 4.5e-52 209.1 248 50.8
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.0e-51 208.0 284 43.3
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.7e-51 207.2 185 58.9
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 1.5e-50 204.1 185 57.3
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 2.5e-50 203.4 296 43.6
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.2e-50 203.0 272 43.4
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 3.6e-49 199.5 293 40.3
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 6.1e-49 198.7 291 44.7
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.8e-48 197.2 196 53.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 4.0e-48 196.1 290 43.1
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 5.2e-48 195.7 180 57.8
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 4.4e-47 192.6 246 48.4
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 5.4e-45 185.7 291 38.8
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.5e-44 183.0 206 51.0
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 7.7e-44 181.8 252 45.2
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 5.0e-43 179.1 258 41.9
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.2e-42 176.0 253 45.5
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.2e-42 176.0 253 45.5
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 4.7e-41 172.6 261 38.7
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.0e-40 171.4 236 44.5
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 6.8e-40 168.7 234 44.4
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 2.6e-39 166.8 236 43.6
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.4e-39 166.4 299 38.8
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.5e-39 165.2 188 52.7
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.3e-38 164.5 265 37.0
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 2.2e-38 163.7 219 44.7
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 4.5e-36 156.0 279 40.1
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 1.7e-35 154.1 285 34.7
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.0e-32 144.8 301 37.5
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 3.4e-31 139.8 194 46.9
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 7.0e-29 132.1 179 44.1
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 1.8e-24 117.5 208 35.6
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.5e-23 114.4 122 53.3
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 2.9e-22 110.2 300 28.0
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 3.9e-19 99.8 99 53.5
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 5.0e-19 99.4 133 40.6
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 2.1e-17 94.0 349 25.8
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.3e-14 84.7 71 59.2
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.3e-14 84.7 71 59.2
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.4e-14 82.4 70 58.6
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 4.1e-13 79.7 219 28.3
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 1.5e-10 71.2 372 21.8
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 2.1e-09 67.4 293 26.6
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 8.1e-09 65.5 67 44.8
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 4.0e-08 63.2 63 49.2
Manes.16G136900 Manihot esculenta HOM05D002665 ORTHO05D002991 6.8e-08 62.4 81 38.3
CANSAT11G0691 Cannabis sativa HOM05D002665 ORTHO05D002991 8.9e-08 62.0 328 22.3
TAR383G0485 Trochodendron aralioides HOM05D002665 ORTHO05D002991 8.9e-08 62.0 252 24.6
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 1.2e-07 61.6 67 46.3
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 1.2e-07 61.6 59 47.5
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 1.5e-07 61.2 64 42.2
THA.LOC104803590 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 3.4e-07 60.1 61 44.3
Solyc08g006030.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 4.4e-07 59.7 63 44.4
Sopen08g002000 Solanum pennellii HOM05D002665 ORTHO05D002991 4.4e-07 59.7 63 44.4
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 4.4e-07 59.7 63 44.4
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 5.8e-07 59.3 270 24.4
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 7.6e-07 58.9 318 22.6
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 7.6e-07 58.9 63 44.4
Os02g0306550 Oryza sativa ssp. japonica HOM05D044331 ORTHO05D049861 9.9e-07 58.5 112 31.2
MD15G1100300 Malus domestica HOM05D002665 ORTHO05D002991 1.7e-06 57.8 171 26.9
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 2.2e-06 57.4 65 38.5
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 2.2e-06 57.4 56 46.4
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 2.9e-06 57.0 152 23.7
Dinv36353 Davidia involucrata HOM05D002665 ORTHO05D002991 4.9e-06 56.2 54 46.3
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 4.9e-06 56.2 298 21.8
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 4.9e-06 56.2 67 38.8
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 4.9e-06 56.2 63 42.9
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 4.9e-06 56.2 194 27.3
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 4.9e-06 56.2 66 42.4
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 4.9e-06 56.2 311 21.5
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 6.4e-06 55.8 66 40.9
DCAR_000689 Daucus carota HOM05D002665 ORTHO05D002991 6.4e-06 55.8 66 40.9
FvH4_2g36360 Fragaria vesca HOM05D002665 ORTHO05D002991 6.4e-06 55.8 64 40.6
FAN27G0789 Fragaria x ananassa HOM05D002665 ORTHO05D002991 6.4e-06 55.8 64 40.6
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 6.4e-06 55.8 66 42.4


User provided reference genes

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