Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.1e-150 537.0 360 100.0
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 7.4e-57 225.3 118 86.4
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.5e-54 217.6 119 83.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 2.0e-54 217.2 131 77.1
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 4.9e-53 212.6 117 81.2
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 6.5e-53 212.2 122 79.5
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 8.4e-53 211.8 118 82.2
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.5e-52 210.3 118 81.4
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.6e-51 207.6 117 80.3
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.1e-51 207.2 117 81.2
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.7e-51 206.8 118 80.5
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.7e-51 206.8 118 80.5
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 3.5e-51 206.5 138 71.7
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 3.5e-51 206.5 117 79.5
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.8e-50 204.1 118 78.0
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.9e-50 203.0 117 78.6
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.5e-49 201.1 137 69.3
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.3e-48 198.0 115 75.7
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.7e-48 196.4 112 80.4
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 4.8e-48 196.1 118 76.3
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 6.3e-48 195.7 118 72.9
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 8.2e-48 195.3 117 76.9
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 1.1e-47 194.9 118 75.4
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.8e-47 194.1 117 72.6
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.1e-47 193.4 118 75.4
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 5.3e-47 192.6 117 73.5
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.2e-46 191.4 120 75.0
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 5.9e-46 189.1 138 63.0
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 7.6e-46 188.7 137 66.4
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.7e-45 187.6 112 75.9
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 3.8e-45 186.4 117 69.2
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 6.5e-45 185.7 125 66.4
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.4e-44 184.5 115 73.0
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 5.5e-44 182.6 117 71.8
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 5.5e-44 182.6 137 63.5
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.5e-43 179.9 113 72.6
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 4.6e-43 179.5 120 68.3
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 6.1e-43 179.1 115 71.3
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.8e-42 177.6 118 71.2
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.8e-42 177.6 118 71.2
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.8e-42 177.6 140 65.7
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 2.3e-42 177.2 120 69.2
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.3e-42 177.2 115 69.6
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 5.1e-42 176.0 115 69.6
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 5.1e-42 176.0 140 67.1
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.1e-41 174.9 118 69.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.5e-41 174.5 117 67.5
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.9e-41 174.1 118 70.3
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.9e-41 174.1 117 66.7
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 9.7e-41 171.8 119 66.4
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.6e-40 171.0 117 66.7
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.6e-40 171.0 117 65.0
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.6e-40 171.0 117 65.0
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 4.8e-40 169.5 118 62.7
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.4e-39 167.9 117 62.4
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.8e-39 167.5 117 65.0
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 2.4e-39 167.2 118 65.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 6.9e-39 165.6 137 56.2
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 9.0e-39 165.2 118 64.4
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 9.0e-39 165.2 118 64.4
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.6e-38 163.7 117 66.7
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 3.4e-38 163.3 118 63.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 3.4e-38 163.3 118 63.6
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 3.4e-38 163.3 118 64.4
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.0e-37 161.8 119 65.5
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.1e-36 158.3 135 55.6
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.4e-36 157.9 117 64.1
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.9e-36 157.5 118 64.4
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.9e-36 157.5 117 65.0
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 3.2e-36 156.8 118 61.9
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 3.2e-36 156.8 124 58.9
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 9.4e-36 155.2 129 55.0
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 9.4e-36 155.2 118 60.2
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.7e-35 153.7 103 73.8
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 3.6e-35 153.3 139 57.6
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 5.1e-34 149.4 99 68.7
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.0e-33 147.5 118 59.3
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 9.7e-33 145.2 118 57.6
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 5.0e-29 132.9 96 71.9
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 1.4e-28 131.3 91 65.9
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 4.2e-28 129.8 209 46.4
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 3.6e-27 126.7 116 50.9
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 7.7e-22 109.0 120 46.7
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 7.2e-20 102.4 124 41.9
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 1.6e-19 101.3 227 41.0
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 2.6e-17 94.0 246 40.2
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 3.7e-16 90.1 268 34.3
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 1.8e-15 87.8 221 30.8
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 1.2e-14 85.1 222 50.9
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.6e-14 84.7 63 65.1
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 2.0e-14 84.3 154 34.4
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 5.9e-14 82.8 283 37.8
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 7.7e-14 82.4 252 37.7
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 2.9e-13 80.5 278 50.0
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 8.5e-13 79.0 124 41.9
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 2.5e-12 77.4 67 59.7
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 5.5e-12 76.3 116 43.1
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 5.5e-12 76.3 64 60.9
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 7.2e-12 75.9 154 34.4
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 9.4e-12 75.5 63 68.3
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 9.4e-12 75.5 63 68.3
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 1.2e-11 75.1 54 66.7
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.1e-11 74.3 53 67.9
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.7e-11 73.9 227 44.1
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 8.0e-11 72.4 247 36.0
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 1.0e-10 72.0 257 36.6
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 1.4e-10 71.6 61 62.3
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 1.8e-10 71.2 62 59.7
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 4.0e-10 70.1 55 65.5
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 4.0e-10 70.1 55 65.5
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 4.0e-10 70.1 61 62.3
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 4.0e-10 70.1 63 63.5
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 5.2e-10 69.7 158 36.1
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 6.8e-10 69.3 55 65.5
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 6.8e-10 69.3 258 41.1
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 8.8e-10 68.9 232 43.1
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.2e-09 68.6 57 59.6
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.5e-09 68.2 55 63.6
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 1.5e-09 68.2 63 58.7
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.0e-09 67.8 61 62.3
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.0e-09 67.8 61 62.3
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 2.0e-09 67.8 62 56.5
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 4.4e-09 66.6 110 41.8
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 4.4e-09 66.6 58 63.8
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 5.7e-09 66.2 67 49.3
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 5.7e-09 66.2 53 66.0
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 9.8e-09 65.5 218 36.7
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 1.3e-08 65.1 251 31.1
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 1.3e-08 65.1 272 41.9
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 1.3e-08 65.1 232 29.7
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 2.8e-08 63.9 67 56.7
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 3.7e-08 63.5 61 54.1
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 3.7e-08 63.5 228 29.4
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 4.8e-08 63.2 266 32.3
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 4.8e-08 63.2 62 54.8
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 6.3e-08 62.8 224 34.4
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 6.3e-08 62.8 234 28.6
Rhsim02G0134300 Rhododendron simsii HOM05D007160 ORTHO05D005331 6.3e-08 62.8 287 39.4
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 1.1e-07 62.0 277 32.9
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 1.4e-07 61.6 243 34.6
CsaV3_6G050380 Cucumis sativus L. HOM05D007160 ORTHO05D005331 1.4e-07 61.6 77 51.9
Lsat_1_v5_gn_7_22701 Lactuca sativa HOM05D007160 ORTHO05D005331 1.4e-07 61.6 62 53.2
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 1.4e-07 61.6 324 32.7
Manes.16G031700 Manihot esculenta HOM05D007160 ORTHO05D005331 1.8e-07 61.2 61 52.5
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 1.8e-07 61.2 216 37.5
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 2.4e-07 60.8 59 50.8
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.4e-07 60.8 234 29.9
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 2.4e-07 60.8 61 60.7
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 2.4e-07 60.8 61 57.4
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.0e-07 59.3 60 53.3
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 9.1e-07 58.9 69 49.3
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 1.6e-06 58.2 269 36.4
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.7e-06 57.4 64 53.1
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 4.5e-06 56.6 274 29.9
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.9e-06 56.2 60 50.0
Rhsim13G0180200 Rhododendron simsii HOM05D007160 ORTHO05D005331 5.9e-06 56.2 274 32.5
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 5.9e-06 56.2 68 48.5


User provided reference genes

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