Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 3.5e-35 151.8 121 100.0
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 1.1e-17 93.6 78 83.3
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 5.6e-17 91.3 76 84.2
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 4.7e-16 88.2 76 86.8
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 6.2e-16 87.8 79 74.7
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 1.1e-15 87.0 75 84.0
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 1.4e-15 86.7 74 81.1
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 1.4e-15 86.7 79 75.9
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 1.8e-15 86.3 82 70.7
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 2.3e-15 85.9 79 81.0
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 3.1e-15 85.5 75 81.3
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 3.1e-15 85.5 75 82.7
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 4.0e-15 85.1 75 72.0
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 8.9e-15 84.0 75 58.7
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 8.9e-15 84.0 76 80.3
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 1.2e-14 83.6 75 81.3
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 4.4e-14 81.6 79 67.1
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 5.8e-14 81.3 75 70.7
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 5.8e-14 81.3 75 77.3
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 5.8e-14 81.3 75 58.7
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 1.3e-13 80.1 79 69.6
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 1.3e-13 80.1 76 80.3
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.7e-13 79.7 76 77.6
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 1.7e-13 79.7 76 77.6
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 1.7e-13 79.7 79 59.5
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 2.2e-13 79.3 77 64.9
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 3.7e-13 78.6 79 53.2
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 3.7e-13 78.6 76 68.4
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 3.7e-13 78.6 75 72.0
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 4.9e-13 78.2 82 72.0
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 6.4e-13 77.8 81 67.9
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 6.4e-13 77.8 85 74.1
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 8.3e-13 77.4 76 64.5
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 1.1e-12 77.0 73 72.6
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 1.1e-12 77.0 76 63.2
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 1.4e-12 76.6 79 67.1
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.4e-12 76.6 72 75.0
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 1.4e-12 76.6 80 66.2
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 1.9e-12 76.3 67 85.1
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.4e-12 75.9 76 63.2
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 2.4e-12 75.9 73 71.2
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 3.2e-12 75.5 75 77.3
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 3.2e-12 75.5 75 74.7
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 4.1e-12 75.1 81 64.2
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 4.1e-12 75.1 81 64.2
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 5.4e-12 74.7 75 74.7
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 5.4e-12 74.7 75 72.0
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 7.1e-12 74.3 80 76.2
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 9.2e-12 73.9 80 67.5
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 1.2e-11 73.6 77 74.0
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.6e-11 73.2 68 82.4
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 2.7e-11 72.4 81 63.0
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 2.7e-11 72.4 76 48.7
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 3.5e-11 72.0 72 66.7
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 3.5e-11 72.0 73 64.4
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 4.6e-11 71.6 71 74.6
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 6.0e-11 71.2 80 57.5
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 6.0e-11 71.2 80 71.2
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 7.8e-11 70.9 38 81.6
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 1.0e-10 70.5 75 76.0
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.0e-10 70.5 74 59.5
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.0e-10 70.5 74 59.5
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.0e-10 70.5 74 59.5
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.3e-10 70.1 73 61.6
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 1.7e-10 69.7 76 69.7
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-10 69.3 81 61.7
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-10 69.3 81 61.7
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 2.3e-10 69.3 81 61.7
Lalb_Chr18g0059871 Lupinus albus HOM05D004792 ORTHO05D005789 2.3e-10 69.3 65 72.3
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 2.3e-10 69.3 69 52.2
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 3.9e-10 68.6 83 71.1
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 3.9e-10 68.6 82 68.3
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 5.1e-10 68.2 35 85.7
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 6.6e-10 67.8 73 78.1
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 6.6e-10 67.8 35 85.7
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 6.6e-10 67.8 35 85.7
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 6.6e-10 67.8 72 55.6
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 6.6e-10 67.8 75 68.0
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 6.6e-10 67.8 73 76.7
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 6.6e-10 67.8 77 62.3
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 6.6e-10 67.8 77 62.3
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.1e-09 67.0 75 77.3
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 1.1e-09 67.0 72 62.5
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 1.5e-09 66.6 65 81.5
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 1.9e-09 66.2 74 58.1
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.9e-09 66.2 68 60.3
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 2.5e-09 65.9 73 53.4
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 2.5e-09 65.9 75 77.3
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 2.5e-09 65.9 79 70.9
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 3.3e-09 65.5 73 57.5
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 3.3e-09 65.5 35 80.0
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 3.3e-09 65.5 35 80.0
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 3.3e-09 65.5 74 73.0
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 4.3e-09 65.1 35 77.1
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 7.3e-09 64.3 38 71.1
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 7.3e-09 64.3 68 66.2
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 9.5e-09 63.9 74 63.5
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.6e-08 63.2 75 66.7
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 2.8e-08 62.4 35 80.0
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 2.8e-08 62.4 38 68.4
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.8e-08 62.4 35 77.1
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 4.7e-08 61.6 37 70.3
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 4.7e-08 61.6 68 58.8
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 6.2e-08 61.2 38 68.4
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 6.2e-08 61.2 37 67.6
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 1.4e-07 60.1 35 77.1
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 1.4e-07 60.1 35 77.1
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 2.3e-07 59.3 79 68.4
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 2.3e-07 59.3 74 64.9
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.3e-07 59.3 35 71.4
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.3e-07 59.3 35 71.4
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.3e-07 59.3 35 71.4
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 2.3e-07 59.3 43 65.1
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 3.1e-07 58.9 35 74.3
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 3.1e-07 58.9 35 74.3
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 3.1e-07 58.9 35 74.3
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 3.1e-07 58.9 35 74.3
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 3.1e-07 58.9 35 74.3
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 3.1e-07 58.9 33 72.7
MBI02_g23716_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 4.0e-07 58.5 32 71.9
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 4.0e-07 58.5 77 57.1
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 6.8e-07 57.8 34 70.6
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 6.8e-07 57.8 81 66.7
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 6.8e-07 57.8 75 60.0
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.2e-06 57.0 82 42.7
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 1.2e-06 57.0 30 76.7
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 3.4e-06 55.5 78 46.2
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 3.4e-06 55.5 37 64.9
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 3.4e-06 55.5 34 64.7
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 4.4e-06 55.1 74 60.8
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 4.4e-06 55.1 74 60.8
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 4.4e-06 55.1 74 60.8
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 4.4e-06 55.1 74 60.8
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 4.4e-06 55.1 74 60.8
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 4.4e-06 55.1 73 65.8
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 7.6e-06 54.3 74 60.8
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 7.6e-06 54.3 37 67.6


User provided reference genes

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