Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 6.1e-163 577.4 287 100.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.6e-102 375.2 307 64.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 3.4e-97 359.0 307 63.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 9.9e-97 357.5 307 62.5
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 5.4e-95 351.7 310 62.6
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.1e-94 349.7 308 59.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.0e-94 348.2 310 58.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.8e-94 347.8 308 59.7
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.3e-93 347.1 306 58.2
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 8.7e-93 344.4 308 62.0
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.1e-92 344.0 307 59.9
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.5e-92 343.6 302 62.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.8e-91 339.3 306 59.2
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.8e-91 339.3 310 60.0
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.6e-91 339.0 306 59.5
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 3.6e-91 339.0 312 59.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 4.8e-91 338.6 308 59.4
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.0e-90 335.5 308 58.8
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 5.3e-90 335.1 311 58.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.3e-90 335.1 309 59.9
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.2e-89 334.0 309 57.9
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.2e-89 334.0 310 59.7
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.5e-89 333.6 310 57.4
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 4.5e-89 332.0 308 57.5
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 4.5e-89 332.0 310 58.4
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 5.8e-89 331.6 310 59.4
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 7.6e-89 331.3 308 58.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 2.2e-88 329.7 310 60.0
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.9e-88 329.3 309 57.9
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 2.9e-88 329.3 310 57.7
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 2.9e-88 329.3 310 57.7
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.8e-88 328.9 308 58.1
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 4.9e-88 328.6 309 59.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 6.4e-88 328.2 311 59.2
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.4e-87 327.0 304 58.9
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.4e-87 326.2 308 56.5
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.4e-87 325.1 307 57.0
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.2e-86 323.9 308 57.8
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.1e-86 323.2 307 56.4
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.7e-86 322.8 311 59.8
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 3.5e-86 322.4 310 59.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 6.0e-86 321.6 307 56.4
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 7.9e-86 321.2 308 56.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-85 320.1 309 57.0
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.8e-85 320.1 308 56.2
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 3.0e-85 319.3 310 56.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.0e-85 319.3 307 55.4
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 5.1e-85 318.5 304 58.6
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.5e-84 317.0 304 58.2
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.9e-84 316.6 309 55.3
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.5e-84 316.2 307 57.3
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.3e-84 315.8 310 57.7
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 4.3e-84 315.5 311 56.3
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 7.4e-84 314.7 307 55.7
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.1e-82 310.8 307 57.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.3e-82 308.5 308 56.8
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 6.9e-82 308.1 290 57.2
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.2e-81 307.4 306 55.9
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.5e-81 307.0 307 55.0
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.0e-81 306.6 311 54.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.6e-81 306.2 308 54.2
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 4.5e-81 305.4 307 55.0
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 5.8e-81 305.1 306 55.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 9.9e-81 304.3 298 57.4
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.3e-80 303.9 306 54.9
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.3e-80 303.9 306 54.9
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.9e-80 302.8 312 55.1
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 3.8e-80 302.4 302 57.0
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 8.4e-80 301.2 304 56.6
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.6e-78 297.0 308 51.3
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.6e-78 297.0 309 55.3
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.7e-78 296.2 352 48.6
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.6e-78 295.4 311 54.0
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.9e-77 292.4 306 53.3
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.5e-76 289.7 308 51.6
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.3e-76 289.3 307 53.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.3e-76 289.3 301 56.1
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.2e-75 284.6 300 55.0
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-74 284.3 300 55.0
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 5.3e-74 282.0 307 52.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 6.9e-74 281.6 300 54.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.9e-74 281.6 300 54.7
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 9.0e-74 281.2 309 49.5
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-73 280.4 300 54.3
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-73 280.4 300 54.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-73 279.6 299 54.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-73 279.6 299 54.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.4e-73 279.3 303 52.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.5e-73 278.9 300 54.0
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.7e-72 276.9 299 53.5
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.2e-72 276.6 306 53.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.2e-72 276.6 307 49.8
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.4e-72 274.6 300 53.7
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 9.3e-71 271.2 276 53.6
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.9e-70 268.1 296 53.4
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.9e-70 268.1 308 49.4
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.0e-69 266.2 296 51.0
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.0e-69 266.2 308 49.0
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.3e-68 262.7 307 49.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 9.7e-68 261.2 316 47.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 4.8e-67 258.8 274 52.6
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 6.3e-67 258.5 315 47.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.8e-66 256.9 312 47.8
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 6.9e-66 255.0 311 48.9
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.5e-65 252.3 306 46.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.5e-65 252.3 306 46.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.3e-64 250.8 303 46.2
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 3.8e-64 249.2 270 55.9
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.6e-62 243.8 245 52.7
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.5e-60 237.3 306 43.5
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.5e-60 237.3 308 45.8
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 2.0e-60 236.9 350 43.1
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.7e-60 235.3 306 44.1
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 9.7e-60 234.6 306 44.1
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.2e-59 233.4 239 51.0
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.8e-58 230.3 306 44.4
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.8e-58 230.3 306 44.4
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 4.1e-58 229.2 307 41.7
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 4.5e-57 225.7 307 44.3
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 4.5e-57 225.7 307 44.3
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 5.9e-57 225.3 308 44.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-56 224.6 205 60.0
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 5.5e-55 218.8 306 43.1
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 3.0e-53 213.0 307 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 8.8e-53 211.5 306 41.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 3.3e-52 209.5 311 41.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.5e-49 200.7 320 38.4
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.3e-48 197.6 162 67.3
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 8.5e-48 194.9 183 57.4
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.6e-46 190.7 205 49.8
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.0e-41 173.7 189 49.2
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.6e-41 173.3 159 61.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 7.7e-41 171.8 196 46.4
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.5e-39 167.5 343 33.5
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.6e-33 147.5 150 52.7
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.0e-25 120.6 144 45.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.3e-24 117.9 153 47.1
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.3e-24 117.1 235 35.3
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.3e-23 113.2 171 38.0
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.0e-20 104.0 156 43.6
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-18 97.4 102 58.8
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.5e-15 87.8 71 54.9
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 3.3e-15 86.7 90 53.3
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.3e-15 85.5 87 52.9
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 4.9e-11 72.8 118 37.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 8.3e-11 72.0 202 26.2
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.6e-09 66.2 42 61.9
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.5e-07 61.2 103 35.0
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.2e-06 58.2 107 29.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.8e-06 57.0 196 28.6


User provided reference genes

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