Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 0.0e+00 1077.4 594 100.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 6.5e-276 953.7 574 91.8
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 9.3e-275 949.9 574 91.6
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.3e-272 941.4 574 90.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.0e-268 929.9 574 89.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 8.5e-268 926.8 574 88.9
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.2e-263 912.1 573 88.7
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.2e-263 912.1 544 92.1
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 3.7e-263 911.4 573 87.3
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 9.1e-262 906.7 573 88.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.2e-260 902.1 573 85.3
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.9e-260 901.7 575 87.0
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 5.0e-260 901.0 577 86.3
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.1e-259 899.8 573 85.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.1e-259 899.8 573 86.4
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 5.1e-257 891.0 561 85.9
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 5.7e-256 887.5 574 85.0
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 9.7e-256 886.7 572 85.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 9.7e-256 886.7 573 85.5
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.7e-255 885.9 574 84.7
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.8e-255 885.2 573 85.3
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 4.8e-255 884.4 573 85.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.8e-255 884.4 573 85.3
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.4e-254 882.9 573 84.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.8e-254 882.5 575 84.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.1e-254 881.7 573 85.5
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 4.1e-254 881.3 572 85.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.3e-254 880.9 573 84.3
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 9.1e-254 880.2 559 86.6
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.2e-253 879.8 577 83.5
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 7.7e-253 877.1 572 85.0
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.0e-252 876.7 572 83.9
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 8.5e-252 873.6 572 85.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.7e-250 867.8 576 83.0
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.0e-249 865.1 544 87.7
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.7e-249 864.0 573 83.8
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 9.7e-248 860.1 573 82.5
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.7e-247 859.4 575 83.3
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.8e-247 858.6 573 83.2
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 8.2e-247 857.1 580 82.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.4e-246 856.3 577 82.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.4e-246 856.3 573 82.5
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.1e-246 854.7 581 81.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 9.1e-246 853.6 575 82.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.2e-245 853.2 576 82.3
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.0e-245 852.4 570 82.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-245 852.0 575 82.4
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.7e-245 852.0 568 83.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.5e-245 851.3 581 81.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.0e-244 850.1 580 80.9
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.3e-244 849.7 579 80.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.0e-244 847.8 568 83.3
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.5e-243 846.3 582 81.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.9e-243 845.9 568 82.7
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 3.2e-243 845.1 578 80.1
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.7e-242 842.0 573 82.7
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.6e-242 841.6 568 82.4
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.4e-241 839.7 573 82.5
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 5.2e-241 837.8 576 80.9
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.6e-240 835.5 581 80.9
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 5.7e-240 834.3 580 79.5
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 4.8e-239 831.2 585 80.9
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.4e-238 827.8 575 81.2
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.0e-237 825.9 576 81.4
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 5.9e-237 824.3 574 80.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 8.5e-236 820.5 618 75.9
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 8.5e-236 820.5 581 78.5
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 7.2e-235 817.4 580 78.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.6e-234 816.2 577 80.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.1e-234 815.8 577 79.2
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.6e-234 815.1 568 80.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.7e-234 814.7 618 75.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 8.0e-234 813.9 580 78.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.4e-233 813.1 617 75.9
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.3e-233 812.4 580 77.9
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 3.0e-233 812.0 582 77.5
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.2e-233 811.2 549 82.5
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 7.5e-232 807.4 581 79.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 9.8e-232 807.0 569 77.2
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.3e-231 806.6 572 79.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-230 802.7 581 77.3
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 7.0e-230 800.8 581 77.1
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.7e-229 798.9 579 77.4
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.3e-228 795.8 595 76.6
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-227 793.1 577 76.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 2.5e-227 792.3 575 77.0
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 7.3e-227 790.8 544 81.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.2e-226 790.0 579 76.9
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.1e-226 789.3 583 78.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 6.1e-226 787.7 580 76.2
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 6.1e-226 787.7 575 77.9
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 6.1e-226 787.7 573 77.7
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.0e-226 787.3 629 73.3
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-225 786.2 578 76.5
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 3.7e-223 778.5 573 77.3
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.1e-222 776.9 574 77.4
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.6e-221 773.1 611 72.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 4.6e-221 771.5 551 79.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 5.9e-221 771.2 579 75.3
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 5.9e-221 771.2 579 75.3
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.9e-219 766.1 573 75.7
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 3.6e-218 761.9 922 53.9
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.2e-216 756.9 573 75.4
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.1e-214 750.4 573 75.0
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 5.4e-214 748.0 573 74.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-211 740.3 608 71.4
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.9e-211 739.6 669 66.7
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.6e-210 736.5 581 74.2
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.9e-207 724.9 590 69.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.0e-204 717.2 608 69.6
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.2e-202 710.3 574 71.4
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 6.2e-202 708.0 576 70.8
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 6.8e-201 704.5 585 68.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.8e-200 701.4 573 69.1
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.2e-182 642.1 576 64.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.6e-179 631.7 579 63.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 5.3e-177 625.2 566 63.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.2e-173 614.0 424 82.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.0e-167 594.3 554 62.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.2e-166 589.0 401 82.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.4e-131 472.6 575 51.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 4.5e-128 462.6 590 49.2
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.6e-117 426.4 420 63.3
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.2e-112 411.4 259 85.3
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-99 367.9 501 51.1
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 7.0e-97 359.0 510 50.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.7e-90 336.7 252 69.4
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.7e-82 311.2 273 67.8
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.8e-66 256.9 587 33.4
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.1e-56 224.6 774 32.2
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.6e-56 223.4 560 34.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.4e-49 201.8 129 82.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.3e-47 195.3 156 68.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.7e-45 187.2 125 78.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.4e-39 168.7 94 90.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.4e-28 131.3 93 81.7
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.9e-17 95.1 494 25.3
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.2e-17 93.2 567 22.9
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.2e-16 92.4 76 68.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.0e-15 87.8 109 56.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 9.7e-14 82.8 82 64.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 9.7e-14 82.8 592 23.3
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.7e-13 82.0 199 40.2
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.5e-11 74.3 52 73.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 5.0e-10 70.5 82 59.8
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.2e-08 65.9 54 68.5


User provided reference genes

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