Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 7.5e-52 206.8 99 100.0
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 1.1e-21 106.7 59 86.4
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 3.0e-16 88.6 210 31.0
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 2.5e-15 85.5 57 68.4
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 2.0e-12 75.9 60 55.0
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 4.4e-12 74.7 59 50.8
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 9.9e-12 73.6 47 68.1
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.3e-11 73.2 57 57.9
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.3e-11 73.2 57 57.9
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.7e-11 72.8 62 56.5
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 1.7e-11 72.8 62 51.6
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 2.9e-11 72.0 57 50.9
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 4.9e-11 71.2 55 58.2
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 4.9e-11 71.2 54 61.1
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 6.4e-11 70.9 36 77.8
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 6.4e-11 70.9 59 57.6
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 6.4e-11 70.9 55 52.7
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 8.3e-11 70.5 65 50.8
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 8.3e-11 70.5 34 91.2
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 1.1e-10 70.1 59 57.6
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 1.1e-10 70.1 62 51.6
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 1.9e-10 69.3 50 62.0
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 2.4e-10 68.9 59 54.2
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 2.4e-10 68.9 85 45.9
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 2.4e-10 68.9 65 52.3
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 2.4e-10 68.9 65 50.8
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 4.1e-10 68.2 56 50.0
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 4.1e-10 68.2 59 47.5
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 4.1e-10 68.2 84 46.4
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 4.1e-10 68.2 34 82.4
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 4.1e-10 68.2 60 53.3
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 5.4e-10 67.8 36 80.6
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 5.4e-10 67.8 33 87.9
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 5.4e-10 67.8 50 62.0
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 7.1e-10 67.4 55 60.0
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 9.2e-10 67.0 55 49.1
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 9.2e-10 67.0 55 49.1
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 1.2e-09 66.6 37 78.4
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 1.2e-09 66.6 60 48.3
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 1.2e-09 66.6 52 55.8
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 1.6e-09 66.2 52 59.6
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 2.1e-09 65.9 43 67.4
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 2.1e-09 65.9 77 44.2
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 4.6e-09 64.7 50 52.0
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 4.6e-09 64.7 35 74.3
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 4.6e-09 64.7 36 69.4
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 6.0e-09 64.3 34 79.4
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 6.0e-09 64.3 53 54.7
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 6.0e-09 64.3 56 51.8
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 6.0e-09 64.3 34 70.6
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 6.0e-09 64.3 47 63.8
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 7.8e-09 63.9 59 44.1
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 7.8e-09 63.9 59 47.5
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 7.8e-09 63.9 34 82.4
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 1.3e-08 63.2 62 46.8
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 1.3e-08 63.2 62 46.8
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.3e-08 63.2 34 79.4
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 1.3e-08 63.2 34 79.4
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 1.7e-08 62.8 88 38.6
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 1.7e-08 62.8 33 75.8
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 2.3e-08 62.4 32 78.1
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 2.3e-08 62.4 32 78.1
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 2.3e-08 62.4 60 48.3
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 2.3e-08 62.4 74 40.5
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 3.0e-08 62.0 56 44.6
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 3.0e-08 62.0 34 76.5
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 3.0e-08 62.0 68 42.6
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 3.0e-08 62.0 34 76.5
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 3.0e-08 62.0 34 76.5
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 3.9e-08 61.6 59 42.4
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 3.9e-08 61.6 64 45.3
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 5.1e-08 61.2 100 37.0
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 5.1e-08 61.2 56 51.8
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 6.6e-08 60.8 59 47.5
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 6.6e-08 60.8 33 75.8
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 8.6e-08 60.5 36 66.7
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 8.6e-08 60.5 56 44.6
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 8.6e-08 60.5 56 44.6
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 8.6e-08 60.5 56 44.6
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 8.6e-08 60.5 66 45.5
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 8.6e-08 60.5 66 45.5
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 1.1e-07 60.1 36 63.9
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 1.9e-07 59.3 34 73.5
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.9e-07 59.3 56 46.4
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 1.9e-07 59.3 34 76.5
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 2.5e-07 58.9 50 52.0
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 2.5e-07 58.9 35 68.6
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 4.3e-07 58.2 74 33.8
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 5.6e-07 57.8 56 48.2
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 5.6e-07 57.8 31 80.6
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 5.6e-07 57.8 50 52.0
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.3e-07 57.4 50 52.0
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.3e-07 57.4 50 52.0
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 7.3e-07 57.4 33 69.7
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 9.5e-07 57.0 56 42.9
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 1.6e-06 56.2 32 68.8
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 2.8e-06 55.5 33 66.7
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 3.6e-06 55.1 47 57.4
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 3.6e-06 55.1 47 57.4


User provided reference genes

Program Settings