Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 4.9e-45 184.1 94 100.0
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 2.3e-26 122.1 77 85.7
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 1.1e-25 119.8 77 80.5
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 2.4e-23 112.1 77 79.2
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 2.4e-23 112.1 77 79.2
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 5.3e-15 84.3 68 70.6
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 3.8e-13 78.2 73 65.8
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 6.5e-13 77.4 76 61.8
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 1.1e-12 76.6 79 60.8
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 1.1e-12 76.6 71 60.6
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 1.1e-12 76.6 74 60.8
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 1.4e-12 76.3 79 60.8
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 1.4e-12 76.3 55 70.9
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 2.5e-12 75.5 79 60.8
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 3.2e-12 75.1 74 62.2
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 3.2e-12 75.1 64 65.6
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 9.4e-12 73.6 74 58.1
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 1.6e-11 72.8 75 56.0
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 2.1e-11 72.4 77 55.8
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 2.7e-11 72.0 67 58.2
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 2.7e-11 72.0 77 55.8
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 2.7e-11 72.0 75 57.3
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 4.6e-11 71.2 72 59.7
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 6.1e-11 70.9 90 52.2
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 6.1e-11 70.9 74 55.4
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 7.9e-11 70.5 71 57.7
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 7.9e-11 70.5 74 58.1
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 7.9e-11 70.5 75 54.7
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 1.4e-10 69.7 74 63.5
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 1.8e-10 69.3 74 52.7
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 2.3e-10 68.9 79 60.8
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 2.3e-10 68.9 82 51.2
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 2.3e-10 68.9 82 51.2
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 3.0e-10 68.6 74 54.1
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 8.8e-10 67.0 78 57.7
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 8.8e-10 67.0 82 50.0
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 1.5e-09 66.2 65 53.8
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 1.5e-09 66.2 71 54.9
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.5e-09 65.5 74 58.1
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 3.3e-09 65.1 72 54.2
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 3.3e-09 65.1 74 58.1
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 4.3e-09 64.7 74 51.4
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 5.7e-09 64.3 72 54.2
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 5.7e-09 64.3 75 48.0
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 7.4e-09 63.9 67 53.7
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 7.4e-09 63.9 47 68.1
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 9.7e-09 63.5 72 54.2
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 9.7e-09 63.5 81 53.1
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 9.7e-09 63.5 74 56.8
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 1.3e-08 63.2 74 55.4
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 1.3e-08 63.2 72 54.2
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 1.3e-08 63.2 76 53.9
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 2.2e-08 62.4 77 49.4
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 3.7e-08 61.6 75 52.0
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 3.7e-08 61.6 70 52.9
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 3.7e-08 61.6 75 50.7
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 6.3e-08 60.8 77 49.4
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 6.3e-08 60.8 60 56.7
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 8.2e-08 60.5 62 56.5
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 1.4e-07 59.7 75 50.7
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 1.8e-07 59.3 36 77.8
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 2.4e-07 58.9 56 57.1
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 2.4e-07 58.9 42 69.0
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 3.1e-07 58.5 56 57.1
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 4.1e-07 58.2 53 62.3
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 4.1e-07 58.2 73 53.4
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 4.1e-07 58.2 61 54.1
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 4.1e-07 58.2 49 59.2
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 4.1e-07 58.2 69 49.3
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 5.3e-07 57.8 77 44.2
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 5.3e-07 57.8 36 80.6
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 5.3e-07 57.8 46 67.4
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 6.9e-07 57.4 74 50.0
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 9.1e-07 57.0 83 49.4
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 9.1e-07 57.0 83 49.4
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 1.5e-06 56.2 50 64.0
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 2.0e-06 55.8 44 63.6
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 2.6e-06 55.5 36 77.8
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 2.6e-06 55.5 56 55.4
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 2.6e-06 55.5 56 55.4
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 2.6e-06 55.5 34 79.4
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 2.6e-06 55.5 73 45.2
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 2.6e-06 55.5 98 41.8
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 3.4e-06 55.1 78 47.4
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 3.4e-06 55.1 80 50.0
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.4e-06 55.1 28 89.3
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 5.9e-06 54.3 35 74.3
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 5.9e-06 54.3 68 50.0
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 5.9e-06 54.3 32 78.1
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 7.7e-06 53.9 49 53.1


User provided reference genes

Program Settings