Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 5.1e-99 364.4 182 100.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.1e-96 355.1 182 95.6
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 3.1e-96 355.1 182 95.6
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.5e-95 352.8 182 95.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.9e-95 350.9 182 94.5
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.7e-94 349.4 180 95.0
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 93.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 94.0
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 94.0
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 93.4
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 93.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 93.4
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 93.4
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 5.0e-94 347.8 182 94.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 8.5e-94 347.1 182 92.9
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 92.9
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 92.9
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.9
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.3
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 91.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.2e-93 344.7 177 94.9
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 93.4
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 5.5e-93 344.4 179 94.4
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 90.1
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 92.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 92.9
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 90.7
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 92.3
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.9
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 4.7e-92 341.3 176 95.5
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.2
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 91.8
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 91.2
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 91.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 7.9e-92 340.5 178 93.8
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 7.9e-92 340.5 180 91.1
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.1
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 89.0
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 3.0e-91 338.6 181 90.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 90.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 89.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 89.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.1e-91 337.8 202 84.7
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 90.1
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.1e-90 336.7 182 89.6
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-90 336.3 176 93.2
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 89.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 4.4e-90 334.7 182 90.7
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 4.4e-90 334.7 181 89.0
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 7.4e-90 334.0 178 91.0
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 2.8e-89 332.0 178 90.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.7e-89 331.6 176 92.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 8.2e-89 330.5 179 89.4
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.1e-88 330.1 176 92.6
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.4e-88 329.7 173 92.5
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.4e-88 328.9 172 94.8
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 4.1e-88 328.2 197 84.3
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 7.0e-88 327.4 179 88.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.2e-87 326.6 194 84.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.6e-87 325.5 182 88.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.6e-87 325.5 173 91.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.5e-87 325.1 172 91.3
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 86.3
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.3e-86 323.2 182 86.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.7e-86 322.8 182 85.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.3
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 86.3
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 85.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.2e-85 318.5 176 87.5
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 85.2
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 85.2
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 83.5
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.1e-84 315.8 178 86.5
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 3.6e-84 315.1 182 84.1
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 8.0e-84 313.9 182 85.7
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.4e-83 313.2 178 87.6
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 4.0e-83 311.6 177 85.3
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 9.7e-82 307.0 208 76.4
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.8e-81 304.7 182 85.7
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 6.3e-81 304.3 174 84.5
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 6.3e-81 304.3 174 84.5
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-80 303.1 174 83.9
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.8e-80 302.8 174 83.9
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 2.4e-80 302.4 174 83.3
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 3.1e-80 302.0 173 83.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 5.5e-77 291.2 182 79.7
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.7e-76 288.1 155 92.3
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 4.7e-76 288.1 153 88.9
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 2.3e-75 285.8 155 90.3
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.0e-75 285.4 177 80.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 3.0e-75 285.4 151 92.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.0e-75 285.4 182 78.0
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 6.8e-75 284.3 183 78.7
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.5e-74 283.1 149 89.3
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 7.5e-74 280.8 155 87.7
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 9.4e-69 263.8 155 83.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 6.8e-67 257.7 181 74.6
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 8.8e-67 257.3 128 95.3
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.4e-66 255.4 184 75.0
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.7e-65 253.1 139 85.6
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.2e-65 252.7 130 92.3
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 4.7e-60 235.0 126 87.3
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 5.2e-59 231.5 184 60.9
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 4.1e-56 221.9 181 66.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 7.0e-56 221.1 177 58.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 3.0e-54 215.7 185 57.8
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 2.1e-52 209.5 105 96.2
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.6e-52 208.8 105 96.2
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.6e-52 208.8 105 96.2
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.8e-50 201.4 105 91.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.3e-46 189.5 101 88.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.9e-45 186.4 179 60.3
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.6e-45 184.9 100 89.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 8.1e-44 181.0 154 66.2
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-41 173.3 92 92.4
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.2e-40 169.1 86 94.2
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 3.5e-39 165.6 92 85.9
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 5.6e-37 158.3 91 78.0
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 5.8e-34 148.3 127 59.1
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.4e-33 144.4 92 81.5
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 7.8e-31 137.9 87 75.9
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 4.3e-29 132.1 66 93.9
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 9.9e-26 120.9 77 79.2
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.4e-24 117.1 70 84.3
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.9e-19 98.2 49 91.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.9e-14 82.4 182 30.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.3e-13 79.3 182 29.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 9.6e-13 77.8 182 31.3
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.6e-12 77.0 49 75.5
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 29.7
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.6e-12 75.9 52 65.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.6e-12 75.9 182 30.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.8e-12 75.5 182 29.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 6.2e-12 75.1 182 28.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.1e-11 74.3 182 30.2
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.4e-11 73.9 185 28.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.4e-11 73.9 181 29.8
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 31.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 4.0e-11 72.4 181 30.4
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 6.9e-11 71.6 183 26.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 28.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.2e-10 70.9 182 28.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 28.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 28.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 3.4e-10 69.3 182 26.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.5e-10 68.9 181 28.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 7.6e-10 68.2 181 27.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 7.6e-10 68.2 182 28.6
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.6e-10 68.2 182 27.5
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 7.6e-10 68.2 182 26.9
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.2e-09 66.6 182 26.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.8e-09 65.9 180 30.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.4e-08 63.9 159 28.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.4e-08 63.9 198 24.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.9e-08 63.5 137 31.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 8.7e-06 54.7 133 27.8


User provided reference genes

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