Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 3.8e-98 361.7 210 100.0
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 2.6e-30 136.3 177 52.5
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.5e-30 135.6 182 46.7
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 7.6e-30 134.8 171 53.8
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.0e-29 134.4 184 45.7
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.0e-29 134.4 184 46.2
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 1.0e-29 134.4 171 53.2
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 2.9e-29 132.9 179 51.4
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 2.9e-29 132.9 146 53.4
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.0e-29 132.1 184 45.1
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.1e-28 131.0 184 45.1
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.4e-28 130.6 184 45.1
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 1.2e-27 127.5 181 47.0
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 3.5e-27 125.9 172 51.7
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 6.1e-27 125.2 181 45.3
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.3e-26 123.2 176 48.3
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 3.9e-26 122.5 187 47.6
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 7.4e-25 118.2 178 46.1
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 9.7e-25 117.9 181 47.0
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.6e-24 117.1 176 47.2
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 1.6e-24 117.1 176 42.6
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 1.6e-24 117.1 103 68.0
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 8.2e-24 114.8 180 47.2
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.4e-23 114.0 187 43.9
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 3.1e-23 112.8 154 50.6
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 5.3e-23 112.1 176 44.3
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 6.9e-23 111.7 167 45.5
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 6.9e-23 111.7 176 42.0
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 1.5e-22 110.5 171 43.9
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 4.5e-22 109.0 103 68.0
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 5.9e-22 108.6 147 57.1
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 5.9e-22 108.6 135 59.3
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 7.7e-22 108.2 173 39.9
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 7.7e-22 108.2 161 48.4
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.0e-21 107.8 174 43.7
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 1.7e-21 107.1 142 54.2
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 3.8e-21 105.9 177 41.2
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.1e-20 104.4 180 44.4
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.1e-20 104.4 183 45.4
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 1.4e-20 104.0 177 46.3
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.9e-20 103.6 105 59.0
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-20 103.2 105 60.0
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-20 103.2 105 60.0
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.5e-20 103.2 103 57.3
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 2.5e-20 103.2 183 40.4
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.2e-20 102.4 105 57.1
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 5.5e-20 102.1 101 62.4
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.2e-19 100.9 134 52.2
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.6e-19 100.5 177 44.1
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-19 99.8 181 43.6
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.6e-19 99.4 184 41.8
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.6e-19 99.0 157 45.9
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 4.6e-19 99.0 177 42.4
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 7.9e-19 98.2 184 45.1
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.4e-18 97.4 178 39.9
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 3.9e-18 95.9 182 39.6
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 3.9e-18 95.9 174 39.7
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 8.8e-18 94.7 181 44.2
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 1.1e-17 94.4 123 43.9
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.5e-17 93.2 100 64.0
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 3.3e-17 92.8 179 40.8
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 3.3e-17 92.8 102 56.9
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 5.7e-17 92.0 154 46.1
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 7.4e-17 91.7 114 53.5
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.7e-16 90.5 161 38.5
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.7e-16 90.5 97 59.8
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.8e-16 89.0 185 35.7
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 6.3e-16 88.6 108 47.2
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 8.2e-16 88.2 105 51.4
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 8.2e-16 88.2 183 38.8
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.1e-15 87.8 174 42.0
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.4e-15 87.4 106 57.5
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 1.4e-15 87.4 178 43.8
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.8e-15 87.0 184 36.4
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 2.4e-15 86.7 180 36.1
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 4.1e-15 85.9 103 49.5
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 5.3e-15 85.5 108 53.7
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 9.1e-15 84.7 99 56.6
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 9.1e-15 84.7 102 49.0
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.2e-14 84.3 85 61.2
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.5e-14 84.0 145 44.8
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 2.0e-14 83.6 108 54.6
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.0e-14 83.6 107 56.1
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 3.4e-14 82.8 102 53.9
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 3.4e-14 82.8 249 33.3
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.0e-13 81.3 183 33.3
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.0e-13 81.3 186 39.8
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 2.9e-13 79.7 110 43.6
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.9e-13 79.7 183 35.5
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 5.0e-13 79.0 95 47.4
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 8.5e-13 78.2 106 50.9
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.4e-12 77.4 105 44.8
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 1.9e-12 77.0 106 47.2
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 4.2e-12 75.9 182 35.2
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 4.2e-12 75.9 138 47.1
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 7.2e-12 75.1 106 52.8
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 7.2e-12 75.1 193 38.9
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.2e-11 74.3 109 53.2
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-11 74.3 106 53.8
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-11 74.3 109 53.2
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.2e-11 74.3 109 53.2
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 1.6e-11 73.9 105 51.4
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.6e-11 73.9 181 37.6
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 2.1e-11 73.6 99 51.5
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 2.7e-11 73.2 182 36.8
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 2.7e-11 73.2 105 46.7
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 3.6e-11 72.8 105 50.5
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 3.6e-11 72.8 105 50.5
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 6.1e-11 72.0 103 52.4
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 7.9e-11 71.6 182 39.0
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.4e-10 70.9 184 34.2
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 1.8e-10 70.5 173 37.0
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 3.0e-10 69.7 109 51.4
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 8.8e-10 68.2 109 50.5
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 3.3e-09 66.2 178 37.1
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 3.3e-09 66.2 107 47.7
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 7.4e-09 65.1 180 36.1
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 9.7e-09 64.7 105 53.3
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 9.7e-09 64.7 104 51.0
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 9.7e-09 64.7 88 48.9
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 2.2e-08 63.5 75 64.0
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 3.7e-08 62.8 99 50.5
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 2.4e-07 60.1 181 37.6
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 4.1e-07 59.3 51 60.8
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 5.3e-07 58.9 188 37.8
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 7.0e-07 58.5 97 44.3
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 2.6e-06 56.6 99 46.5
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 7.7e-06 55.1 51 58.8


User provided reference genes

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