Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 7.4e-170 600.5 318 100.0
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.4e-120 434.9 271 81.2
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-119 433.7 271 81.2
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.8e-107 393.3 315 64.1
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 9.0e-107 391.0 315 69.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 4.4e-106 388.7 315 67.3
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.9e-105 385.2 262 74.0
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.9e-105 385.2 262 74.0
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 4.2e-104 382.1 321 66.4
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 4.6e-103 378.6 309 61.8
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 3.9e-102 375.6 262 71.0
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.5e-101 373.6 310 61.9
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 4.3e-101 372.1 316 66.1
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 4.8e-100 368.6 316 66.1
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 2.6e-98 362.8 310 58.4
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.2e-96 355.5 239 73.2
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 2.7e-95 352.8 261 67.8
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 4.3e-93 345.5 311 56.9
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 2.1e-92 343.2 321 61.7
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.8e-92 342.8 274 61.3
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.8e-91 340.1 313 59.1
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 3.1e-91 339.3 270 62.2
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 6.9e-91 338.2 274 61.3
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.2e-90 337.4 273 60.8
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 7.6e-90 334.7 315 55.6
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.1e-88 330.9 316 59.5
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.4e-88 330.5 315 58.1
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 5.5e-88 328.6 326 54.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 2.1e-87 326.6 312 54.8
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 4.6e-87 325.5 315 56.5
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 6.0e-87 325.1 313 55.0
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 7.9e-87 324.7 315 58.1
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.0e-86 324.3 312 56.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.9e-86 322.4 320 53.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.1e-86 322.0 314 58.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 5.1e-86 322.0 312 57.1
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 5.1e-86 322.0 312 57.1
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 5.1e-86 322.0 312 57.1
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.9e-85 320.1 311 57.2
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 7.4e-85 318.2 316 56.0
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 9.6e-85 317.8 318 56.9
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 3.7e-84 315.8 311 53.4
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 6.2e-84 315.1 312 55.8
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.8e-83 313.5 312 55.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 2.4e-83 313.2 312 56.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 4.0e-83 312.4 322 55.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 6.9e-83 311.6 257 59.9
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.2e-82 310.8 311 55.6
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-82 310.8 310 58.1
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 5.8e-82 308.5 323 54.2
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 5.8e-82 308.5 268 59.3
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 7.6e-82 308.1 260 61.2
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.0e-81 307.8 276 57.6
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 1.3e-81 307.4 321 53.3
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.7e-81 307.0 266 60.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 3.8e-81 305.8 257 58.4
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 8.4e-81 304.7 312 57.1
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.1e-80 304.3 314 55.4
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.1e-80 304.3 267 58.1
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.5e-80 303.1 263 61.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.5e-80 303.1 263 61.2
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 3.2e-80 302.8 248 59.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.2e-80 302.4 263 55.9
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.6e-79 300.4 248 60.1
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 2.1e-79 300.1 250 60.0
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 2.7e-79 299.7 252 58.7
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 4.6e-79 298.9 316 54.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.6e-79 298.9 310 55.5
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 6.0e-79 298.5 254 59.1
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.0e-78 297.7 270 56.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.3e-78 297.4 262 59.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 2.3e-78 296.6 260 56.5
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.0e-78 296.2 255 58.4
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.9e-78 295.8 321 54.2
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.1e-77 294.3 266 53.8
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.5e-77 293.1 316 50.9
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 9.7e-77 291.2 256 58.2
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 2.2e-76 290.0 320 50.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.8e-76 289.7 256 57.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.8e-76 288.9 256 57.4
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 6.3e-76 288.5 258 59.3
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.3e-73 280.8 270 54.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.2e-73 280.0 312 50.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 6.5e-73 278.5 326 55.5
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.1e-72 277.7 259 55.2
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 4.2e-72 275.8 271 50.6
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 3.6e-71 272.7 264 54.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.0e-70 271.2 227 57.7
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 1.3e-68 264.2 255 49.4
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 3.4e-66 256.1 263 54.4
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.2e-63 247.7 243 52.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.1e-59 233.0 180 65.6
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-58 230.7 280 47.1
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.0e-53 213.8 171 63.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 3.5e-50 203.0 173 62.4
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.4e-48 194.9 173 62.4
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.7e-47 192.6 173 59.5
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.0e-46 191.4 179 53.6
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.3e-46 190.3 174 60.3
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 5.2e-46 189.1 175 56.0
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-45 187.6 247 46.6
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 7.5e-45 185.3 195 51.8
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.7e-44 183.0 180 52.2
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 5.4e-35 152.5 281 31.7
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 6.1e-31 139.0 86 81.4
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 4.0e-30 136.3 260 35.0
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 2.6e-29 133.7 275 34.2
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 9.8e-21 105.1 94 60.6
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 3.0e-17 93.6 276 27.2
Nn3g21217 Nelumbo nucifera HOM05D006774 ORTHO05D008411 1.8e-06 57.8 41 63.4
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 6.8e-06 55.8 60 51.7


User provided reference genes

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