Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 1.7e-221 772.3 375 100.0
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.5e-113 413.7 284 71.5
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.0e-109 401.0 261 77.8
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 3.1e-106 389.4 266 72.9
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 8.9e-106 387.9 335 60.9
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 2.6e-105 386.3 256 71.9
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 4.4e-105 385.6 302 64.6
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 4.4e-105 385.6 289 67.8
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 8.4e-104 381.3 335 60.0
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 3.2e-103 379.4 261 70.1
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 7.1e-103 378.3 291 66.0
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.1e-102 376.7 277 66.8
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 2.1e-102 376.7 292 62.7
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 3.5e-102 375.9 289 64.0
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 6.6e-101 371.7 277 66.1
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 4.3e-100 369.0 273 66.7
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 1.3e-99 367.5 277 65.3
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 2.1e-99 366.7 292 66.1
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 6.2e-99 365.2 286 62.2
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.2e-99 365.2 277 65.7
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.4e-98 363.2 287 63.8
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.1e-98 362.8 277 65.0
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 5.3e-98 362.1 267 67.8
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 1.3e-96 357.5 279 62.4
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 1.9e-95 353.6 298 61.7
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 2.4e-95 353.2 258 67.4
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 2.4e-95 353.2 376 52.7
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 3.2e-95 352.8 416 48.6
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 5.4e-95 352.1 283 64.3
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 1.6e-94 350.5 262 69.5
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.6e-94 350.5 258 65.1
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 2.7e-94 349.7 298 61.4
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 3.5e-94 349.4 339 58.4
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.3e-93 347.4 311 60.1
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 1.7e-93 347.1 303 59.7
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 5.1e-93 345.5 269 64.7
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 5.1e-93 345.5 311 60.5
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 6.6e-93 345.1 320 58.4
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 7.3e-92 341.7 272 64.3
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 9.6e-92 341.3 255 65.5
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 1.6e-91 340.5 303 58.1
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 1.6e-91 340.5 267 64.0
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 2.1e-91 340.1 288 60.8
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 6.2e-91 338.6 272 63.6
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 6.2e-91 338.6 251 66.5
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 6.2e-91 338.6 260 63.5
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 6.2e-91 338.6 273 62.6
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 9.0e-90 334.7 303 58.1
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.2e-89 334.3 280 60.7
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 4.5e-89 332.4 313 56.5
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 5.8e-89 332.0 279 63.1
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.3e-88 330.9 265 61.9
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.3e-88 330.9 264 60.2
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 1.1e-87 327.8 290 60.0
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 2.4e-87 326.6 231 68.0
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 2.4e-87 326.6 307 57.3
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 2.1e-86 323.6 276 57.6
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 3.9e-85 319.3 254 62.6
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 3.9e-85 319.3 423 44.0
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.7e-85 318.5 223 69.1
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 1.9e-84 317.0 254 61.0
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 3.3e-84 316.2 253 62.1
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 3.3e-84 316.2 254 61.8
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 5.6e-84 315.5 255 62.0
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 6.2e-83 312.0 254 62.2
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 6.2e-83 312.0 254 62.2
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 8.1e-83 311.6 253 61.7
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.1e-82 311.2 264 58.7
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.1e-82 311.2 256 61.7
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 3.1e-82 309.7 255 60.8
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 4.0e-82 309.3 314 54.5
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 5.3e-82 308.9 252 60.7
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 5.3e-82 308.9 252 60.7
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 1.5e-81 307.4 255 62.4
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 1.5e-81 307.4 255 62.4
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 2.9e-80 303.1 327 53.2
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 4.9e-80 302.4 329 52.3
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 6.5e-80 302.0 404 45.3
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 5.5e-79 298.9 259 61.0
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.6e-78 297.4 342 51.5
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.1e-78 297.0 227 67.0
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 2.7e-78 296.6 274 58.8
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 4.6e-78 295.8 289 56.1
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 6.0e-78 295.4 294 55.4
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.8e-77 293.9 282 55.0
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.1e-76 291.2 232 62.1
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 5.7e-68 262.3 259 56.4
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 2.5e-63 246.9 272 52.9
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 5.5e-63 245.7 256 50.8
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 1.8e-61 240.7 264 51.1
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 2.1e-54 217.2 290 42.4
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 2.9e-48 196.8 271 45.8
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.5e-47 194.5 263 41.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 5.7e-44 182.6 284 37.7
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 2.8e-43 180.3 271 42.4
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 7.0e-42 175.6 162 58.0
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 8.5e-40 168.7 290 35.5
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 9.4e-39 165.2 163 53.4
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 4.0e-37 159.8 153 60.8
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.0e-32 145.2 242 37.6
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.2e-32 144.1 94 72.3
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 3.2e-18 97.1 73 61.6
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.2e-17 95.1 95 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 6.6e-16 89.4 157 33.1
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 2.5e-15 87.4 286 26.9
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 4.3e-15 86.7 80 53.8
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 8.0e-14 82.4 105 44.8
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 2.3e-13 80.9 153 32.0
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 4.0e-13 80.1 62 59.7
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 2.7e-09 67.4 178 26.4
Nn1g00671 Nelumbo nucifera HOM05D001602 ORTHO05D001470 3.0e-08 63.9 163 33.1
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.9e-07 61.2 160 34.4
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 4.3e-07 60.1 170 31.2
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 7.3e-07 59.3 177 30.5
TWI81G0159 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 1.2e-06 58.5 142 33.8
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 1.6e-06 58.2 52 50.0
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 2.1e-06 57.8 115 33.9
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 2.1e-06 57.8 115 33.9
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.1e-06 57.8 188 31.4
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 2.1e-06 57.8 115 33.9
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 2.1e-06 57.8 188 31.4
Hma1.2p1_0414F.1_g147600 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 2.1e-06 57.8 143 31.5
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 2.1e-06 57.8 135 31.1
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.1e-06 57.8 146 30.8
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.8e-06 57.4 147 29.3
CDE11G1140 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 3.6e-06 57.0 142 33.8
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 4.7e-06 56.6 115 33.0
Mapoly0019s0025 Marchantia polymorpha HOM05D014140 ORTHO05D015854 4.7e-06 56.6 104 28.8
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 6.2e-06 56.2 136 30.9
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 8.1e-06 55.8 131 31.3


User provided reference genes

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