Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 4.1e-285 984.2 551 100.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.3e-132 477.6 598 51.0
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.0e-126 456.4 591 50.1
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 3.4e-122 443.0 598 49.0
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 2.4e-99 367.1 594 43.6
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.1e-87 327.4 598 38.3
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 3.4e-85 320.1 599 41.4
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 2.8e-84 317.0 598 40.8
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 3.0e-78 297.0 596 37.9
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 5.2e-78 296.2 573 36.8
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 7.8e-74 282.3 598 36.0
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.1e-72 278.5 598 35.3
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.4e-70 271.6 691 34.0
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 2.6e-69 267.3 597 36.5
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 3.4e-69 266.9 598 35.3
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.2e-63 248.4 593 33.9
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.1e-62 245.4 691 31.3
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 3.1e-62 243.8 597 34.2
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 9.9e-61 238.8 597 33.8
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.1e-59 235.3 585 32.1
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.1e-56 225.3 598 34.4
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 2.1e-55 221.1 597 33.2
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.7e-52 211.5 367 40.1
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.7e-52 211.5 596 29.7
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 5.4e-51 206.5 601 31.6
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 9.2e-51 205.7 287 48.1
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 3.9e-49 200.3 591 32.8
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.6e-49 199.5 606 29.7
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.5e-48 198.4 341 39.9
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 3.3e-48 197.2 581 32.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 7.3e-48 196.1 581 29.9
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 5.2e-46 189.9 595 30.8
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 9.0e-46 189.1 575 32.3
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 2.2e-44 184.5 597 31.2
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 2.9e-44 184.1 598 30.1
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.4e-43 181.8 596 29.4
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.2e-43 180.3 590 31.0
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 7.1e-43 179.5 590 29.5
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.0e-41 175.6 597 27.3
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.3e-41 175.3 567 29.6
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.5e-40 171.8 558 30.3
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 4.0e-38 163.7 595 28.4
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 5.3e-38 163.3 640 27.8
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.0e-38 162.5 558 29.2
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.6e-37 161.0 551 29.0
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.9e-37 159.1 586 27.8
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.3e-36 158.7 588 27.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.7e-36 158.3 564 30.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.2e-36 157.9 625 27.2
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 3.8e-36 157.1 586 31.1
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 4.9e-36 156.8 590 29.0
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 6.4e-36 156.4 632 26.6
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 1.9e-35 154.8 286 39.2
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 4.2e-35 153.7 231 42.0
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.7e-34 151.0 283 39.2
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.6e-34 150.2 581 27.0
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.3e-33 147.9 599 27.9
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 3.0e-33 147.5 623 26.0
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.9e-33 147.1 593 29.0
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.7e-33 146.4 623 25.8
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.3e-32 144.1 596 26.8
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.6e-32 143.3 584 27.7
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.6e-31 141.7 597 27.5
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.1e-31 141.4 140 58.6
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.7e-31 140.6 680 26.3
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 4.0e-30 137.1 556 27.5
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 5.3e-30 136.7 644 26.4
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 5.3e-30 136.7 558 28.9
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 9.0e-30 136.0 555 28.8
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 9.0e-30 136.0 555 28.8
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 9.0e-30 136.0 592 25.2
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 5.8e-29 133.3 603 26.7
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.7e-28 131.7 597 26.8
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 2.9e-28 131.0 591 27.7
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.1e-27 129.0 240 39.6
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 3.2e-27 127.5 588 27.0
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.7e-26 124.4 560 27.1
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.7e-26 124.4 588 25.2
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.5e-26 124.0 535 27.9
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.5e-26 124.0 599 25.4
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 6.0e-26 123.2 475 27.8
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 3.0e-25 120.9 706 24.4
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.5e-24 118.6 574 26.8
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.5e-24 117.9 599 24.5
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.3e-24 117.1 588 24.8
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 9.6e-24 115.9 546 25.1
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 3.7e-23 114.0 600 25.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.7e-23 114.0 587 24.9
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 4.8e-23 113.6 587 25.6
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.8e-23 113.6 668 24.0
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 6.2e-23 113.2 562 28.3
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 8.2e-23 112.8 599 25.7
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 8.2e-23 112.8 589 25.8
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 8.2e-23 112.8 262 32.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 2.4e-22 111.3 569 26.0
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 5.3e-22 110.2 588 24.5
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.2e-21 109.0 167 39.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.5e-21 108.6 353 27.8
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.5e-21 108.6 353 27.8
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.6e-21 107.8 623 23.3
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 5.8e-21 106.7 567 25.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.3e-20 105.5 626 23.0
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.5e-19 101.3 645 24.7
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.5e-19 101.3 347 26.2
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.1e-18 98.2 594 25.3
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 2.1e-18 98.2 594 25.4
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 7.9e-18 96.3 555 25.0
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-16 92.4 840 20.5
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.9e-16 91.7 307 27.7
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 4.3e-16 90.5 598 22.9
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 4.8e-15 87.0 734 22.9
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 1.4e-14 85.5 154 37.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.2e-13 82.4 235 31.9
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 3.2e-11 74.3 544 22.8
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 5.5e-11 73.6 486 23.0
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.2e-10 72.4 197 35.5
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 1.0e-09 69.3 552 23.0
Actinidia00480 Actinidia chinensis HOM05D001349 ORTHO05D005940 3.0e-09 67.8 73 56.2
Actinidia08545 Actinidia chinensis HOM05D004923 ORTHO05D005940 3.0e-09 67.8 73 56.2
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.5e-08 65.5 224 25.4
CAN.G213.13 Capsicum annuum HOM05D000181 ORTHO05D005940 4.3e-08 63.9 107 43.0
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 2.2e-07 61.6 552 21.9
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.1e-06 59.3 98 35.7
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 1.8e-06 58.5 245 28.6
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.1e-06 57.4 300 25.0


User provided reference genes

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