Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.1e-166 589.0 297 100.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.2e-107 392.9 243 82.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 7.1e-98 361.3 246 76.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.3e-94 350.5 245 73.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.1e-93 347.4 248 72.6
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.0e-92 343.2 245 73.5
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 9.3e-90 334.3 243 68.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.7e-89 332.8 244 70.9
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 7.9e-89 331.3 253 68.0
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 3.9e-88 328.9 272 65.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 8.7e-88 327.8 241 70.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.5e-87 327.0 242 69.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 4.3e-87 325.5 252 67.5
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 6.2e-86 321.6 242 69.0
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.1e-85 320.9 244 66.8
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.4e-85 319.7 242 67.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 3.1e-85 319.3 242 67.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 4.0e-85 318.9 265 63.8
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 4.0e-85 318.9 245 67.8
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.3e-85 318.5 242 67.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 9.0e-85 317.8 245 67.8
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.5e-84 317.0 245 69.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 4.5e-84 315.5 246 68.3
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 5.8e-84 315.1 246 66.3
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 9.9e-84 314.3 266 63.5
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.2e-83 313.2 246 66.7
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.4e-83 311.2 242 67.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.5e-82 309.7 252 64.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.2e-82 309.3 245 67.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 5.5e-82 308.5 241 66.0
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.5e-82 308.5 237 67.5
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 5.5e-82 308.5 247 66.0
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.5e-82 308.5 242 66.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 5.5e-82 308.5 245 66.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.6e-81 305.4 245 66.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.0e-80 304.3 259 64.5
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.3e-80 303.9 253 65.6
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 3.0e-80 302.8 245 64.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-79 299.7 248 62.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 5.6e-79 298.5 248 62.9
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.6e-79 298.5 248 62.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.4e-79 298.1 248 62.9
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.6e-78 297.0 253 61.7
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.1e-78 296.6 271 60.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.1e-77 294.3 253 61.3
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.1e-77 294.3 303 56.4
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.4e-77 293.1 246 63.8
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.4e-77 293.1 254 61.0
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.3e-77 292.0 261 60.2
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 6.9e-77 291.6 247 62.8
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 6.9e-77 291.6 242 63.6
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.0e-77 291.2 254 59.1
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-76 290.8 248 60.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-76 290.8 248 60.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.2e-76 290.8 248 61.3
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 7.6e-76 288.1 285 57.2
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 7.6e-76 288.1 247 64.4
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.7e-75 287.0 249 62.2
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.2e-75 286.6 248 60.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.9e-75 285.4 252 59.9
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 4.9e-75 285.4 240 65.0
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 4.9e-75 285.4 242 63.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 4.9e-75 285.4 248 61.3
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 8.4e-75 284.6 258 58.5
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.4e-74 283.9 239 62.8
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.9e-74 283.5 248 60.5
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.2e-74 282.7 254 58.7
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 3.2e-74 282.7 239 63.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 7.1e-74 281.6 236 63.6
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.6e-73 280.4 254 58.3
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.6e-73 280.4 252 63.5
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 4.6e-73 278.9 255 57.6
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.6e-73 278.9 245 63.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 6.0e-73 278.5 253 60.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.0e-72 277.7 241 60.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.8e-72 276.9 266 56.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.3e-72 276.6 247 59.1
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 5.1e-72 275.4 245 60.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 8.7e-72 274.6 256 60.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 8.7e-72 274.6 265 56.6
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 8.7e-72 274.6 237 61.2
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-71 274.2 287 52.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.5e-71 273.9 251 57.0
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.5e-71 273.1 243 59.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.7e-71 271.9 246 57.3
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.7e-71 271.9 247 58.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 7.4e-71 271.6 242 58.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.8e-70 269.6 247 57.9
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 6.3e-70 268.5 178 75.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.8e-69 266.9 265 56.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.8e-69 266.9 257 56.8
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-69 266.5 247 57.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 9.0e-69 264.6 240 60.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.2e-68 264.2 241 58.1
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.6e-68 263.1 247 56.3
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 6.1e-65 251.9 233 56.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 3.0e-64 249.6 260 53.5
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.5e-63 246.5 261 52.9
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-61 240.7 215 58.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 3.1e-61 239.6 234 56.4
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 5.3e-61 238.8 230 55.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.0e-59 234.6 235 56.2
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.2e-59 233.4 235 56.2
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.9e-59 233.0 246 54.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.8e-59 232.6 255 52.9
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 7.2e-58 228.4 256 51.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.6e-57 226.1 254 50.4
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.1e-57 225.3 309 47.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 2.0e-52 210.3 244 51.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.0e-51 208.0 210 56.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.8e-48 197.2 300 41.3
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-47 194.5 193 57.0
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.7e-47 192.2 267 45.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.7e-46 189.5 227 51.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.1e-45 188.0 275 41.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.3e-43 181.0 138 64.5
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.9e-43 179.9 127 67.7
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.2e-41 174.5 265 40.4
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-39 167.2 175 56.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.4e-39 166.4 229 48.9
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 9.4e-34 148.3 244 39.3
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.7e-33 146.0 305 36.1
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.4e-32 144.4 291 34.7
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-30 137.1 232 40.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 9.5e-26 121.7 182 45.1
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.9e-22 109.4 167 39.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 6.3e-22 109.0 60 76.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.5e-20 103.2 50 90.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 7.3e-18 95.5 49 79.6
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.2e-17 94.7 89 52.8
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 3.6e-17 93.2 65 66.2
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 9.8e-15 85.1 64 62.5
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-14 84.3 111 50.5
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-14 84.3 111 50.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.4e-14 82.4 101 51.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-12 78.2 63 61.9
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-12 78.2 63 61.9
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.9e-11 73.2 50 68.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.5e-10 71.2 83 43.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.1e-09 67.4 148 37.2


User provided reference genes

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