Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.2e-231 806.2 425 100.0
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.3e-164 583.6 364 90.1
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.4e-123 447.2 367 70.3
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.4e-123 447.2 367 70.3
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.2e-119 434.1 367 69.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.9e-114 415.2 368 68.5
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.0e-111 404.8 366 63.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.5e-106 389.4 366 65.8
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.8e-106 388.3 369 64.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.0e-105 387.9 365 64.7
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.9e-104 383.6 362 64.6
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 6.8e-102 375.2 353 64.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-101 372.9 376 58.2
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 9.8e-101 371.3 382 59.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.1e-99 367.9 397 56.7
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.4e-99 366.7 384 55.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.2e-99 364.8 366 59.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.7e-97 360.5 374 58.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.3e-94 350.1 383 58.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 4.0e-94 349.4 381 55.4
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 8.9e-94 348.2 393 55.7
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.0e-93 347.1 387 55.8
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.4e-93 345.9 381 55.1
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.3e-92 344.4 381 54.9
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.7e-92 344.0 381 54.9
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 6.4e-92 342.0 399 55.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.1e-91 341.3 390 55.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.4e-91 340.9 368 59.5
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 5.4e-91 339.0 382 57.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 7.0e-91 338.6 383 55.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.0e-91 338.6 388 54.4
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.0e-91 338.6 381 53.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.6e-90 337.4 402 51.5
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.0e-90 335.5 398 55.3
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.0e-89 334.7 389 55.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.7e-89 334.0 381 53.8
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.3e-89 333.6 393 52.4
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.1e-89 332.4 383 55.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 6.6e-89 332.0 379 54.6
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 5.6e-88 328.9 374 53.7
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 8.1e-87 325.1 391 54.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.8e-86 323.9 382 54.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 6.8e-86 322.0 380 51.6
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 6.8e-86 322.0 380 51.6
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 8.9e-86 321.6 387 52.5
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.0e-85 320.5 394 52.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.6e-85 320.1 380 54.2
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.4e-85 319.3 382 52.4
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.5e-85 318.5 392 53.1
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.3e-84 317.8 374 53.5
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.7e-84 316.2 382 54.5
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 6.4e-84 315.5 379 59.6
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 6.4e-84 315.5 385 53.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.1e-83 314.7 380 53.9
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.4e-83 313.5 396 52.0
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 5.4e-83 312.4 379 52.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.2e-82 311.2 394 53.6
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.2e-82 311.2 380 52.9
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.6e-82 310.8 385 53.2
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.6e-82 310.8 385 53.0
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.0e-81 308.1 393 52.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-81 307.8 380 52.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.7e-81 307.4 373 53.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.5e-80 304.3 360 53.3
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.5e-80 303.5 381 49.6
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-79 301.2 387 51.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.2e-79 301.2 380 51.1
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 8.1e-79 298.5 356 54.5
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-78 298.1 382 48.7
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 4.0e-78 296.2 381 52.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 9.9e-77 291.6 331 56.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.2e-76 290.4 379 50.1
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 6.4e-76 288.9 381 52.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 9.2e-75 285.0 364 49.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 9.2e-75 285.0 364 49.7
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.7e-74 283.5 381 50.7
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.5e-74 283.1 369 54.5
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.1e-73 279.3 355 52.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.9e-72 277.3 354 52.5
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 2.5e-72 276.9 368 54.1
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 8.1e-71 271.9 385 46.5
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 3.1e-70 270.0 387 47.8
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.1e-70 270.0 385 46.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.0e-69 267.3 367 49.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.8e-69 265.8 377 44.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.7e-68 264.2 366 48.6
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 4.2e-67 259.6 376 50.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.3e-65 253.8 365 43.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 6.6e-65 252.3 344 52.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.3e-64 250.0 344 52.3
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.3e-64 248.8 373 49.3
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.3e-64 248.8 373 49.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.8e-63 246.9 344 51.5
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.1e-62 243.4 322 53.7
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.5e-61 239.6 262 50.0
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 7.6e-61 238.8 365 47.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 9.9e-61 238.4 305 49.8
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.6e-58 231.1 375 43.7
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 3.5e-58 229.9 377 42.4
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 6.0e-58 229.2 305 49.2
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.1e-56 224.9 305 52.1
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.4e-53 213.4 366 44.8
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 2.9e-52 210.3 333 48.6
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 6.4e-52 209.1 302 52.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.2e-51 206.5 373 45.6
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.1e-51 205.7 390 39.5
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.0e-49 200.3 365 39.2
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 5.6e-48 196.1 382 43.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.6e-48 195.3 371 42.3
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 3.7e-47 193.4 374 44.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.8e-47 193.0 374 44.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.0e-46 189.9 379 38.5
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-45 187.2 334 45.2
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 6.5e-44 182.6 387 37.7
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.5e-43 180.6 334 44.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 7.1e-43 179.1 301 46.5
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.7e-42 177.2 383 38.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 7.9e-42 175.6 380 37.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.9e-41 173.3 381 38.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 8.7e-41 172.2 218 56.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.5e-37 161.4 383 36.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.5e-37 161.4 307 40.7
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.3e-36 158.3 382 35.6
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 8.5e-36 155.6 365 39.5
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.2e-34 151.8 382 35.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.8e-33 147.9 177 52.0
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.1e-33 146.4 175 56.0
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 9.7e-32 142.1 373 38.9
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 3.7e-31 140.2 277 44.8
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 6.3e-31 139.4 364 38.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.1e-30 138.7 390 34.6
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.1e-30 135.6 320 38.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 5.9e-29 132.9 306 36.9
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.2e-28 131.0 342 35.1
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 8.5e-28 129.0 367 31.1
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 8.5e-28 129.0 149 60.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 9.4e-27 125.6 298 37.6
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-26 124.8 299 38.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 5.1e-25 119.8 323 35.0
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 2.0e-24 117.9 296 36.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.6e-24 117.5 296 35.8
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.6e-24 117.5 305 34.1
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.7e-23 113.6 314 34.7
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-22 110.9 304 32.9
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-22 110.9 304 32.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.1e-19 102.1 355 31.0
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.2e-17 93.2 376 28.7
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 5.7e-16 89.7 298 33.9
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-15 87.8 299 34.1
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 2.4e-14 84.3 298 33.6
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-13 81.6 297 29.6
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.7e-12 78.2 296 30.1
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 1.5e-11 75.1 375 29.1
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.4e-09 68.6 134 41.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.3e-09 67.8 305 30.8
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.2e-08 65.5 228 31.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.6e-08 64.3 136 33.8
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 9.7e-08 62.4 372 27.2
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.3e-07 62.0 305 30.5
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.3e-07 59.7 221 30.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.3e-07 59.7 221 30.3


User provided reference genes

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