Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 1.0e-146 524.2 484 100.0
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 1.1e-79 301.6 275 61.8
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 3.1e-74 283.5 275 58.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 3.1e-74 283.5 278 63.7
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 6.8e-74 282.3 276 56.5
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 8.9e-74 282.0 274 62.8
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 1.2e-73 281.6 276 62.3
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 9.9e-73 278.5 276 62.7
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 4.9e-72 276.2 276 61.6
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 1.4e-71 274.6 275 54.9
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 7.8e-70 268.9 277 56.3
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 1.0e-69 268.5 278 53.6
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 8.6e-69 265.4 278 55.0
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 3.6e-67 260.0 277 54.9
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 6.2e-67 259.2 268 53.7
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.8e-66 257.7 268 54.1
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 4.0e-66 256.5 274 59.5
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 5.2e-66 256.1 274 52.9
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 2.6e-65 253.8 280 58.2
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 4.4e-65 253.1 273 56.8
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 1.7e-64 251.1 279 53.0
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.2e-63 246.5 275 52.7
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 4.2e-63 246.5 269 55.0
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 9.2e-63 245.4 277 54.5
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 7.8e-62 242.3 275 55.3
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 1.1e-60 238.4 275 51.6
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 2.8e-59 233.8 278 55.0
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 6.2e-59 232.6 282 49.3
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 6.2e-59 232.6 275 49.1
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 8.1e-59 232.3 152 78.3
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 1.4e-58 231.5 275 55.6
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 5.3e-58 229.6 282 48.9
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 6.9e-58 229.2 292 47.9
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 1.3e-56 224.9 274 48.9
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.9e-55 221.1 274 53.6
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 3.2e-55 220.3 274 50.0
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 5.4e-55 219.5 277 48.0
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 5.4e-55 219.5 274 48.2
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 1.2e-54 218.4 274 44.5
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 2.7e-54 217.2 275 54.9
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 1.7e-53 214.5 276 43.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 8.7e-53 212.2 276 44.9
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 2.5e-52 210.7 279 43.4
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 7.3e-52 209.1 246 52.0
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 9.6e-52 208.8 279 46.6
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 2.8e-51 207.2 277 46.6
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 2.8e-51 207.2 275 46.9
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.4e-50 204.9 151 77.5
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 2.4e-50 204.1 238 48.7
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 4.0e-50 203.4 282 50.4
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 6.9e-50 202.6 253 48.2
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 1.2e-49 201.8 278 47.5
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 2.0e-49 201.1 151 76.2
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 2.0e-49 201.1 274 43.1
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 7.6e-49 199.1 274 42.7
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 1.7e-48 198.0 244 44.7
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 1.7e-48 198.0 207 54.1
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 2.2e-48 197.6 274 42.3
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.2e-48 197.6 275 44.4
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 3.8e-48 196.8 274 43.4
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 3.8e-48 196.8 274 42.7
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 4.2e-47 193.4 151 73.5
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 1.3e-45 188.3 272 42.3
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 2.3e-45 187.6 276 42.0
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 2.1e-43 181.0 274 40.5
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 6.2e-43 179.5 274 42.3
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 1.4e-42 178.3 202 52.0
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 4.0e-42 176.8 243 46.9
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 4.0e-42 176.8 146 67.1
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 4.5e-41 173.3 231 47.2
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 1.4e-39 168.3 202 50.0
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 3.2e-39 167.2 208 48.6
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 4.2e-39 166.8 207 51.2
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 9.3e-39 165.6 233 45.1
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 1.8e-37 161.4 221 47.5
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 8.7e-37 159.1 279 39.1
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 7.4e-36 156.0 282 41.1
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 8.2e-35 152.5 207 47.8
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.1e-34 150.6 210 48.1
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 5.3e-34 149.8 240 38.8
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 4.9e-32 143.3 205 43.4
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 1.8e-29 134.8 216 41.2
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 2.5e-28 131.0 112 64.3
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 9.7e-28 129.0 202 40.6
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 1.2e-25 122.1 105 56.2
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 6.9e-18 96.3 274 31.8
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 1.2e-17 95.5 112 42.0
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 5.9e-17 93.2 123 44.7
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 7.7e-17 92.8 176 34.7
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 3.2e-07 60.8 73 43.8


User provided reference genes

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