Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 6.1e-208 727.2 369 100.0
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.8e-157 558.5 363 78.5
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 1.2e-155 553.5 379 74.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 9.9e-150 533.9 378 73.3
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 6.4e-149 531.2 364 75.8
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.4e-148 529.3 365 72.6
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 4.8e-144 515.0 370 72.2
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 7.1e-140 501.1 375 70.4
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 9.3e-140 500.7 377 66.8
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 2.3e-138 496.1 375 69.3
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 9.6e-137 490.7 365 69.6
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 4.8e-136 488.4 378 65.6
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.4e-135 486.9 364 69.0
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 2.6e-134 482.6 368 68.2
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.2e-131 473.8 373 66.2
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.1e-131 473.0 363 66.7
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 2.1e-131 473.0 365 68.5
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.0e-131 471.5 363 66.1
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.0e-130 470.7 371 66.3
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 2.3e-130 469.5 360 66.4
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 3.3e-129 465.7 372 65.6
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 5.7e-129 464.9 364 64.0
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 6.3e-128 461.5 372 64.0
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 3.4e-126 455.7 369 63.7
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.0e-125 454.1 293 74.7
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.3e-125 453.8 338 68.0
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.3e-125 453.8 367 62.7
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 1.7e-125 453.4 367 62.9
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 2.2e-125 453.0 367 62.1
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.2e-125 453.0 372 64.5
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 5.0e-125 451.8 364 63.2
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 6.5e-125 451.4 368 63.6
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 6.5e-125 451.4 367 62.4
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.1e-124 450.7 350 68.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 3.2e-124 449.1 332 67.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.1e-123 446.4 361 62.9
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.0e-122 444.1 363 62.3
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.0e-122 444.1 366 64.5
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.8e-122 443.4 353 65.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 3.7e-120 435.6 373 58.4
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 4.8e-120 435.3 378 59.3
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.4e-119 433.7 376 59.3
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 9.1e-119 431.0 375 58.7
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 9.1e-119 431.0 370 60.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.2e-118 430.6 367 62.7
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.5e-118 430.3 370 60.0
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.5e-118 430.3 367 62.4
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 2.0e-118 429.9 307 68.4
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 2.6e-118 429.5 295 71.2
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 3.4e-118 429.1 371 61.7
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.9e-118 428.3 362 63.3
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 2.2e-117 426.4 372 59.9
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 2.9e-117 426.0 369 59.1
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 5.0e-117 425.2 370 58.1
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.9e-116 423.3 362 59.7
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.2e-116 422.2 362 59.4
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.2e-116 422.2 362 59.4
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 9.4e-116 421.0 405 55.8
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.2e-115 420.6 362 59.4
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.0e-114 417.5 368 57.6
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.9e-114 415.6 368 57.1
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 6.7e-114 414.8 366 60.1
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 2.6e-113 412.9 375 58.7
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.3e-112 410.6 287 68.6
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.8e-112 409.5 310 65.5
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 6.3e-112 408.3 300 67.0
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 8.2e-112 407.9 343 59.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 1.4e-111 407.1 349 58.5
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 2.0e-110 403.3 299 71.9
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 2.6e-110 402.9 381 55.9
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.7e-109 400.2 336 61.9
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.7e-109 400.2 336 61.9
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 5.0e-109 398.7 305 65.2
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.1e-108 397.5 339 59.3
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.2e-108 396.0 368 58.4
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 5.5e-108 395.2 375 55.7
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 9.4e-108 394.4 301 65.4
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.7e-107 392.9 298 66.1
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 3.3e-105 386.0 365 53.7
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 2.8e-104 382.9 389 53.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 2.4e-103 379.8 358 55.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 5.3e-103 378.6 369 55.3
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 2.6e-102 376.3 373 52.8
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.0e-101 374.4 364 53.6
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 8.5e-101 371.3 287 60.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.0e-98 364.4 358 53.1
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.0e-98 364.4 263 64.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 3.0e-98 362.8 301 59.1
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.5e-97 360.5 384 53.6
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 4.4e-97 359.0 326 55.2
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.1e-92 344.4 293 58.4
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 7.2e-92 341.7 346 50.9
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.4e-87 327.4 231 68.8
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 3.1e-87 326.2 293 57.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 5.9e-78 295.4 325 47.7
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 3.3e-76 289.7 291 50.9
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 6.1e-75 285.4 320 48.4
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 1.4e-74 284.3 308 48.1
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.0e-69 268.1 304 46.4
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 5.0e-69 265.8 252 58.7
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.5e-68 263.5 232 54.3
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 4.0e-66 256.1 258 57.4
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.5e-65 254.2 378 41.5
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 9.8e-65 251.5 214 58.9
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.7e-64 250.8 331 45.9
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 6.4e-64 248.8 337 45.4
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 8.3e-64 248.4 335 44.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.2e-62 244.6 289 48.8
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 2.3e-61 240.4 253 53.8
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 7.3e-60 235.3 361 44.3
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.4e-58 231.1 193 61.7
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 2.3e-53 213.8 254 48.0
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 6.8e-50 202.2 286 40.9
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.6e-46 191.0 288 39.6
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.4e-42 177.9 122 63.9
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.0e-42 176.4 165 52.1
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 5.3e-42 176.0 320 35.9
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.0e-41 174.1 109 70.6
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-40 171.4 134 68.7
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.1e-36 158.3 144 53.5
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.6e-35 153.3 270 38.1
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 4.6e-30 136.3 150 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.1e-26 125.2 172 39.0
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 8.4e-24 115.5 97 63.9
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.5e-23 114.0 66 72.7
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 7.1e-23 112.5 70 72.9
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 7.9e-22 109.0 68 67.6
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.0e-21 108.6 62 75.8
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.8e-21 107.8 53 86.8
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.3e-21 107.5 115 46.1
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 5.1e-21 106.3 115 55.7
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 8.7e-21 105.5 67 70.1
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 1.0e-16 92.0 104 48.1
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 5.7e-12 76.3 125 36.0
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.0e-09 67.8 89 42.7
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 4.6e-06 56.6 60 50.0


User provided reference genes

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