Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 1.3e-109 399.8 213 100.0
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 1.4e-42 177.2 183 58.5
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 7.5e-41 171.4 268 48.5
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 6.3e-40 168.3 243 47.7
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 1.1e-39 167.5 265 47.5
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.9e-37 159.5 279 40.9
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.7e-35 152.9 213 49.3
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.0e-34 151.0 286 43.0
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 1.4e-34 150.6 224 46.9
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 2.3e-34 149.8 215 47.4
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 3.0e-34 149.4 207 48.3
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 1.4e-31 140.6 221 44.3
PGSC0003DMG400003652 Solanum tuberosum HOM05D003331 ORTHO05D003264 5.9e-30 135.2 182 51.6
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 1.7e-29 133.7 195 44.1
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.3e-29 133.3 211 45.0
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 6.6e-29 131.7 212 41.5
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 8.6e-29 131.3 221 44.8
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 4.3e-28 129.0 208 46.2
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 9.5e-28 127.9 332 37.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.7e-27 125.6 177 46.3
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 6.1e-27 125.2 119 65.5
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 4.0e-26 122.5 230 40.9
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 6.8e-26 121.7 207 46.4
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 4.4e-25 119.0 164 48.8
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 4.4e-25 119.0 204 43.6
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 7.5e-25 118.2 216 43.5
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 2.2e-24 116.7 222 41.4
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 3.2e-23 112.8 243 38.7
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.4e-23 112.1 186 44.6
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 1.2e-22 110.9 230 37.8
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 1.2e-22 110.9 219 41.6
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 3.5e-22 109.4 242 38.4
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.6e-22 109.0 217 39.2
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 5.9e-22 108.6 256 37.5
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.0e-21 107.8 109 57.8
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.0e-21 107.8 222 39.6
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 1.3e-21 107.5 221 39.8
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.7e-21 107.1 189 41.8
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.7e-21 107.1 226 35.4
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 1.7e-21 107.1 285 34.7
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 2.3e-21 106.7 193 43.5
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.0e-21 106.3 226 36.7
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 3.0e-21 106.3 207 38.6
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 3.9e-21 105.9 205 42.9
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 3.9e-21 105.9 175 47.4
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 5.0e-21 105.5 226 36.7
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 6.6e-21 105.1 234 38.5
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 6.6e-21 105.1 138 49.3
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 6.6e-21 105.1 220 38.2
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 8.6e-21 104.8 203 40.4
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 8.6e-21 104.8 210 38.6
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 8.6e-21 104.8 220 38.2
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 7.3e-20 101.7 289 32.9
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-19 100.5 211 40.8
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.6e-19 100.5 211 40.8
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 2.1e-19 100.1 266 34.2
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 4.7e-19 99.0 219 38.4
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 8.0e-19 98.2 219 39.7
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 8.0e-19 98.2 238 35.7
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 1.0e-18 97.8 199 37.7
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 1.4e-18 97.4 220 40.5
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 1.4e-18 97.4 228 36.8
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 1.8e-18 97.1 234 35.5
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 2.3e-18 96.7 234 35.5
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 2.3e-18 96.7 143 46.9
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.3e-18 96.7 193 42.0
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 4.0e-18 95.9 209 38.3
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 8.9e-18 94.7 247 36.4
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 1.5e-17 94.0 224 37.9
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.0e-17 93.6 206 37.9
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 2.6e-17 93.2 107 53.3
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.4e-17 92.8 221 38.5
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 4.4e-17 92.4 194 38.1
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 4.4e-17 92.4 191 42.4
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.4e-17 92.4 187 39.6
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 4.4e-17 92.4 219 34.7
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 4.4e-17 92.4 219 39.7
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 5.8e-17 92.0 236 36.0
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 9.8e-17 91.3 248 34.7
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 1.3e-16 90.9 178 38.8
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 1.3e-16 90.9 177 41.8
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.2e-16 90.1 247 33.2
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.2e-16 90.1 187 39.0
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 4.9e-16 89.0 133 42.9
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 4.9e-16 89.0 176 39.2
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 8.3e-16 88.2 248 33.1
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 3.2e-15 86.3 220 36.4
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.1e-15 85.9 220 37.3
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.4e-15 85.5 251 32.7
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 5.4e-15 85.5 135 40.0
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 7.0e-15 85.1 255 34.5
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.6e-14 84.0 259 30.9
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 2.0e-14 83.6 118 44.1
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 4.6e-14 82.4 131 43.5
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 6.0e-14 82.0 220 34.5
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 6.0e-14 82.0 220 34.5
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 6.0e-14 82.0 204 37.3
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 7.8e-14 81.6 213 33.8
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 7.8e-14 81.6 214 34.1
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 1.0e-13 81.3 215 33.0
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.3e-13 80.9 182 37.9
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 1.3e-13 80.9 100 48.0
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 1.7e-13 80.5 180 37.2
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 1.7e-13 80.5 96 50.0
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 3.9e-13 79.3 214 32.7
Eucgr.F01674 Eucalyptus grandis HOM05D003331 ORTHO05D003264 3.9e-13 79.3 224 32.6
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 1.1e-12 77.8 182 37.9
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 1.1e-12 77.8 274 32.5
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.5e-12 77.4 190 36.3
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.3e-12 75.9 90 47.8
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 5.6e-12 75.5 184 37.0
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 7.3e-12 75.1 194 36.1
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 9.5e-12 74.7 51 84.3
Rhsim06G0017800 Rhododendron simsii HOM05D003331 ORTHO05D003264 9.5e-12 74.7 204 32.8
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 2.1e-11 73.6 180 36.1
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.1e-11 73.6 175 35.4
SGA_v2.0_scaffold137G35070 Striga asiatica HOM05D003331 ORTHO05D003264 2.1e-11 73.6 50 76.0
Actinidia27234 Actinidia chinensis HOM05D003331 ORTHO05D003264 4.7e-11 72.4 111 47.7
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 4.7e-11 72.4 199 32.7
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 4.7e-11 72.4 199 32.7
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 4.7e-11 72.4 215 34.0
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 4.7e-11 72.4 119 41.2
CDE05G0280 Ceratophyllum demersum HOM05D055448 ORTHO05D003264 8.1e-11 71.6 195 32.8
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 1.4e-10 70.9 186 37.1
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 1.4e-10 70.9 186 37.1
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 1.4e-10 70.9 211 35.5
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.8e-10 70.5 134 39.6
CDE09G0805 Ceratophyllum demersum HOM05D003331 ORTHO05D003264 1.8e-10 70.5 175 34.3
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 3.1e-10 69.7 240 30.8
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 4.0e-10 69.3 107 46.7
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 4.0e-10 69.3 271 28.8
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 4.0e-10 69.3 50 72.0
CDE05G3661 Ceratophyllum demersum HOM05D055448 ORTHO05D003264 5.2e-10 68.9 186 33.9
Dinv39546 Davidia involucrata HOM05D003331 ORTHO05D003264 8.9e-10 68.2 174 32.8
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 1.2e-09 67.8 50 70.0
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-09 67.8 50 70.0
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.2e-09 67.8 211 33.6
Sc02g0008740 Simmondsia chinensis HOM05D003331 ORTHO05D003264 1.5e-09 67.4 50 66.0
ATR0180G005 Amborella trichopoda HOM05D000531 ORTHO05D003264 2.0e-09 67.0 229 31.4
Glyma.11G080000 Glycine max HOM05D003331 ORTHO05D003264 2.0e-09 67.0 160 38.1
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 2.6e-09 66.6 221 29.9
MSTRG.22349 Avicennia marina HOM05D003331 ORTHO05D003264 4.4e-09 65.9 166 34.3
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 5.8e-09 65.5 92 44.6
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 7.5e-09 65.1 134 40.3
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 9.8e-09 64.7 211 31.3
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 9.8e-09 64.7 94 46.8
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 1.3e-08 64.3 120 40.8
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 1.3e-08 64.3 247 30.0
PGR083G0975 Punica granatum HOM05D003331 ORTHO05D003264 3.7e-08 62.8 192 31.2
MSTRG.24234 Avicennia marina HOM05D003331 ORTHO05D003264 4.9e-08 62.4 178 34.8
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 4.9e-08 62.4 193 34.7
HPP92_012946 Vanilla planifolia HOM05D003331 ORTHO05D003264 8.3e-08 61.6 164 36.0
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.1e-07 61.2 84 47.6
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 1.1e-07 61.2 224 33.5
Actinidia15450 Actinidia chinensis HOM05D003331 ORTHO05D003264 4.1e-07 59.3 190 32.1
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 4.1e-07 59.3 131 38.2
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 4.1e-07 59.3 211 30.3
Atru.chr3.881 Acer truncatum HOM05D003331 ORTHO05D003264 5.4e-07 58.9 50 62.0
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.4e-07 58.9 218 31.2
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 9.2e-07 58.2 222 32.0
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 3.5e-06 56.2 140 32.9
Medtr8g075130 Medicago truncatula HOM05D003331 ORTHO05D003264 3.5e-06 56.2 193 32.1
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 4.6e-06 55.8 123 35.0
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 4.6e-06 55.8 229 28.4
MD15G1008300 Malus domestica HOM05D003331 ORTHO05D003264 4.6e-06 55.8 61 57.4
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 6.0e-06 55.5 106 38.7


User provided reference genes

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