Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 5.8e-112 407.5 198 100.0
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 9.3e-78 293.9 169 82.8
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 4.6e-77 291.6 191 75.4
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.3e-75 285.0 205 70.7
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.6e-74 282.0 206 70.4
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 6.2e-74 281.2 197 71.6
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.1e-70 270.4 203 68.0
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 4.2e-70 268.5 201 66.2
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 7.4e-67 257.7 188 69.1
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 9.6e-67 257.3 196 66.8
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.1e-66 256.1 175 70.9
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.1e-65 253.8 211 62.6
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.1e-65 253.8 183 70.5
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 5.3e-65 251.5 188 66.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 5.8e-64 248.1 181 69.1
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 7.6e-64 247.7 195 65.1
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.2e-63 246.1 202 62.4
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.8e-63 245.4 182 66.5
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.8e-63 245.4 182 66.5
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.8e-63 245.4 176 65.9
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 4.9e-63 245.0 205 63.4
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.5e-63 244.6 198 62.6
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.1e-62 243.8 198 61.6
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-62 243.8 196 62.8
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.1e-62 243.8 196 61.7
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.9e-62 243.0 198 62.1
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 5.5e-62 241.5 196 61.7
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-61 240.4 176 66.5
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.6e-61 240.0 201 63.2
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.1e-61 239.6 187 63.6
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.1e-61 239.6 202 59.9
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 3.5e-61 238.8 198 59.1
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 6.0e-61 238.0 188 62.2
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 6.0e-61 238.0 165 67.9
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 7.9e-61 237.7 207 62.3
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 7.9e-61 237.7 174 63.2
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.3e-60 236.1 176 65.9
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 8.7e-60 234.2 186 61.8
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.5e-59 233.4 186 64.0
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.5e-59 232.6 184 64.7
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 3.3e-59 232.3 181 60.8
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 9.6e-59 230.7 200 60.5
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 9.6e-59 230.7 200 60.0
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 9.6e-59 230.7 188 61.2
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.8e-58 228.4 199 59.8
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 6.3e-58 228.0 181 60.2
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 8.2e-58 227.6 191 60.2
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.4e-57 226.1 217 56.2
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.1e-57 225.7 214 56.1
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.1e-57 225.7 173 60.7
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 4.1e-57 225.3 199 58.3
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-56 223.8 207 59.9
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.0e-56 223.0 194 59.8
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 4.5e-56 221.9 194 59.3
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.6e-56 221.1 201 55.7
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.7e-55 219.9 229 54.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.9e-55 219.2 159 71.1
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 8.4e-55 217.6 200 59.0
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.1e-54 217.2 194 57.7
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.9e-54 216.5 198 57.1
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.2e-54 215.3 170 60.6
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 7.2e-54 214.5 221 53.8
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 9.3e-54 214.2 189 57.7
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.2e-53 213.8 182 58.8
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.6e-53 213.4 186 55.9
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 3.5e-53 212.2 157 66.9
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 6.1e-53 211.5 203 54.2
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 7.9e-53 211.1 198 56.1
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.9e-53 211.1 189 56.6
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.0e-52 210.7 200 56.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.0e-52 210.7 202 55.4
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-52 210.3 183 59.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.0e-52 209.1 177 57.1
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 3.0e-52 209.1 191 57.1
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 3.9e-52 208.8 200 55.0
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.1e-52 208.4 196 55.1
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 1.1e-51 207.2 195 55.9
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.9e-51 206.5 211 52.1
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.9e-51 206.5 191 54.5
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.3e-51 205.7 178 57.9
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.7e-50 202.2 172 59.9
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 3.7e-50 202.2 194 55.7
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 8.2e-50 201.1 227 51.1
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 8.2e-50 201.1 212 52.4
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.1e-49 200.7 175 55.4
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.4e-49 200.3 190 53.7
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.4e-49 200.3 190 53.7
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.8e-49 199.9 200 53.5
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.8e-49 199.9 190 53.7
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.8e-49 199.9 190 53.7
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.8e-49 199.9 190 53.7
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.8e-49 199.9 229 53.7
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-49 199.9 217 50.2
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.1e-49 198.7 208 50.5
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 5.3e-49 198.4 173 57.2
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 6.9e-49 198.0 181 56.4
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 6.9e-49 198.0 221 51.1
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 2.6e-48 196.1 177 55.4
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 3.8e-47 192.2 181 53.0
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 5.0e-47 191.8 177 54.8
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 5.0e-47 191.8 181 55.8
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 8.5e-47 191.0 146 69.2
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 2.5e-46 189.5 179 52.0
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 4.2e-46 188.7 128 76.6
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 5.5e-46 188.3 195 51.3
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 7.2e-46 188.0 194 50.0
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.6e-45 185.7 153 60.1
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 3.9e-44 182.2 134 70.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.0e-43 179.9 139 64.7
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 4.3e-43 178.7 152 57.9
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 7.4e-43 177.9 166 54.2
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.5e-40 170.2 133 64.7
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.8e-39 165.6 184 50.0
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 8.5e-39 164.5 305 40.0
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 8.5e-39 164.5 195 43.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.1e-38 164.1 164 52.4
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.1e-37 159.8 168 52.4
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.6e-37 159.1 181 50.3
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 7.9e-37 157.9 167 52.7
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 7.9e-37 157.9 100 73.0
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-35 153.3 189 47.1
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.6e-35 152.9 193 42.5
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.7e-34 150.2 208 40.9
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.8e-34 149.4 194 41.2
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 8.2e-34 147.9 204 46.1
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.1e-33 147.5 156 48.1
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.1e-33 146.0 119 57.1
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.1e-33 145.6 193 40.9
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 5.3e-33 145.2 205 43.4
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 7.0e-33 144.8 290 36.9
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.1e-33 144.4 194 45.9
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 3.5e-32 142.5 193 44.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.5e-32 142.1 193 44.6
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 9.4e-30 134.4 147 49.0
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.7e-29 132.9 177 43.5
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.0e-28 129.0 188 41.0
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 2.6e-27 126.3 134 50.7
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 3.3e-27 125.9 101 59.4
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 4.8e-26 122.1 187 40.6
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 6.3e-26 121.7 159 45.3
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.2e-23 113.2 144 44.4
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.0e-23 112.1 77 67.5
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 6.5e-23 111.7 64 79.7
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.9e-22 110.2 170 40.0
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.7e-21 106.3 199 32.2
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.6e-21 105.9 109 50.5
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 4.7e-21 105.5 128 43.0
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.0e-20 104.4 191 30.9
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 2.8e-18 96.3 135 40.0
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 8.3e-18 94.7 119 42.0
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.0e-15 87.8 57 70.2
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 1.7e-15 87.0 268 30.2
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.4e-09 66.6 127 33.9
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 4.1e-09 65.9 42 66.7
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.3e-07 60.8 231 23.8
SEGI_09349 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.9e-06 57.0 36 69.4


User provided reference genes

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