Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 3.7e-34 147.5 68 100.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.3e-23 112.5 63 79.4
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.7e-23 112.1 61 77.0
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 3.8e-23 110.9 69 72.5
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.5e-22 109.0 64 73.4
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-22 108.2 62 74.2
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.5e-22 108.2 62 74.2
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.5e-22 108.2 62 74.2
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 3.2e-22 107.8 64 70.3
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 4.2e-22 107.5 65 67.7
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 7.2e-22 106.7 57 77.2
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 7.2e-22 106.7 68 69.1
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.2e-21 105.9 69 66.7
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 2.1e-21 105.1 59 72.9
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 2.1e-21 105.1 68 67.6
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.7e-21 104.8 58 69.0
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.3e-20 101.7 52 75.0
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.3e-20 101.7 61 65.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.0e-20 101.3 60 66.7
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.0e-20 101.3 66 60.6
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 5.2e-20 100.5 62 67.7
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 6.8e-20 100.1 52 73.1
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 6.8e-20 100.1 67 62.7
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 8.8e-20 99.8 64 64.1
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.2e-19 99.4 67 59.7
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-19 99.4 54 68.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.0e-19 98.6 66 62.1
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.6e-19 98.2 52 73.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 2.6e-19 98.2 49 77.6
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 3.4e-19 97.8 68 64.7
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 3.4e-19 97.8 70 60.0
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 3.4e-19 97.8 71 60.6
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 4.4e-19 97.4 62 66.1
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 5.7e-19 97.1 62 58.1
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.2e-18 95.1 62 66.1
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 4.8e-18 94.0 60 66.7
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 6.3e-18 93.6 67 59.7
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.4e-17 91.7 66 56.1
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 3.1e-17 91.3 59 64.4
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 3.1e-17 91.3 59 64.4
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.0e-16 88.6 56 62.5
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 2.0e-16 88.6 47 70.2
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.1e-14 82.8 56 53.6
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 2.5e-14 81.6 51 58.8
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.2e-14 81.3 43 62.8
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 5.5e-14 80.5 44 59.1
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.2e-13 79.3 66 45.5
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.6e-13 79.0 70 48.6
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 3.6e-13 77.8 64 53.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 4.7e-13 77.4 68 48.5
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 4.7e-13 77.4 43 62.8
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 6.1e-13 77.0 63 49.2
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 8.0e-13 76.6 58 51.7
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 8.0e-13 76.6 67 46.3
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 8.0e-13 76.6 65 49.2
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.4e-12 75.9 61 49.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.4e-12 75.9 58 50.0
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.8e-12 75.5 61 52.5
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 2.3e-12 75.1 43 58.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.3e-12 75.1 59 47.5
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.0e-12 74.7 43 58.1
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 4.0e-12 74.3 60 55.0
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 5.2e-12 73.9 62 46.8
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 5.2e-12 73.9 52 50.0
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 6.8e-12 73.6 63 49.2
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 8.8e-12 73.2 43 55.8
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 8.8e-12 73.2 52 50.0
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 8.8e-12 73.2 64 48.4
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.2e-11 72.8 43 55.8
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.2e-11 72.8 43 53.5
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.2e-11 72.8 43 55.8
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.2e-11 72.8 52 51.9
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.0e-11 72.0 62 46.8
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 2.0e-11 72.0 64 48.4
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.0e-11 72.0 43 55.8
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.0e-11 72.0 43 55.8
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 2.6e-11 71.6 51 45.1
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.6e-11 71.6 63 46.0
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.6e-11 71.6 60 50.0
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.6e-11 71.6 60 50.0
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.6e-11 71.6 60 50.0
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.6e-11 71.6 65 43.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.4e-11 71.2 49 49.0
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.4e-11 70.9 43 58.1
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 5.7e-11 70.5 58 48.3
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.7e-11 70.5 43 53.5
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 7.5e-11 70.1 48 66.7
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 7.5e-11 70.1 43 51.2
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.3e-10 69.3 43 51.2
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.7e-10 68.9 59 47.5
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.8e-09 65.5 42 50.0
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 9.1e-09 63.2 63 42.9
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.3e-07 58.5 62 40.3
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.5e-06 55.1 45 46.7
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.2e-06 53.5 44 45.5


User provided reference genes

Program Settings