Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 8.7e-101 370.9 289 100.0
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 8.6e-32 141.7 219 57.5
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 8.6e-32 141.7 219 57.5
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 2.5e-31 140.2 88 83.0
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 2.8e-30 136.7 214 59.3
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 1.4e-26 124.4 220 60.5
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 2.7e-25 120.2 217 58.1
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 1.5e-23 114.4 219 56.6
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 4.3e-23 112.8 216 52.3
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 4.0e-21 106.3 218 55.0
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 6.8e-21 105.5 213 54.5
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 9.9e-20 101.7 216 54.6
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 1.1e-18 98.2 210 47.1
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 1.9e-18 97.4 216 50.0
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 1.9e-18 97.4 216 53.7
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 4.1e-18 96.3 217 49.8
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 3.5e-17 93.2 215 49.3
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 6.0e-17 92.4 215 48.4
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 1.7e-16 90.9 215 50.2
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 3.0e-16 90.1 212 43.4
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 3.0e-16 90.1 215 48.8
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 3.0e-16 90.1 219 50.2
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 3.9e-16 89.7 209 49.3
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 3.9e-16 89.7 214 45.8
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 5.1e-16 89.4 218 48.2
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 5.1e-16 89.4 210 55.7
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 8.6e-16 88.6 206 50.5
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 8.6e-16 88.6 214 50.5
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 1.5e-15 87.8 212 44.3
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 1.5e-15 87.8 171 55.6
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 2.5e-15 87.0 178 51.7
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 2.5e-15 87.0 89 59.6
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 3.3e-15 86.7 208 51.4
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 5.6e-15 85.9 92 57.6
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 1.2e-14 84.7 213 48.4
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 1.6e-14 84.3 215 49.3
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 3.6e-14 83.2 214 50.9
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 4.7e-14 82.8 217 41.0
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 6.2e-14 82.4 209 47.4
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 1.1e-13 81.6 219 49.3
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 1.4e-13 81.3 214 52.8
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 2.4e-13 80.5 202 51.5
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 3.1e-13 80.1 201 42.8
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 3.1e-13 80.1 210 51.9
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 6.8e-13 79.0 214 44.9
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 6.8e-13 79.0 195 47.7
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 1.2e-12 78.2 224 50.0
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 1.2e-12 78.2 214 52.3
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 1.2e-12 78.2 177 49.2
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 1.2e-12 78.2 193 47.2
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 1.2e-12 78.2 205 51.7
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 1.5e-12 77.8 205 49.8
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 2.0e-12 77.4 224 50.4
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 2.0e-12 77.4 172 46.5
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 5.8e-12 75.9 209 47.4
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 5.8e-12 75.9 202 46.5
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 5.8e-12 75.9 215 48.4
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 7.6e-12 75.5 209 46.9
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 9.9e-12 75.1 216 51.9
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 1.3e-11 74.7 206 44.7
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 1.7e-11 74.3 212 47.6
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 1.7e-11 74.3 212 47.6
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 2.2e-11 73.9 209 46.9
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 2.2e-11 73.9 209 46.9
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 2.9e-11 73.6 222 43.2
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 3.8e-11 73.2 177 52.5
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 3.8e-11 73.2 216 50.0
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 3.8e-11 73.2 215 48.8
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 4.9e-11 72.8 201 37.8
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 6.4e-11 72.4 190 51.1
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 8.4e-11 72.0 222 44.6
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 8.4e-11 72.0 217 47.5
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 1.1e-10 71.6 214 46.3
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 1.1e-10 71.6 209 46.9
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 1.4e-10 71.2 222 44.1
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 1.9e-10 70.9 219 47.9
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 4.2e-10 69.7 194 48.5
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 5.4e-10 69.3 178 42.1
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 5.4e-10 69.3 194 40.7
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 1.2e-09 68.2 220 42.3
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 1.6e-09 67.8 215 47.4
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 3.5e-09 66.6 217 42.9
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 4.6e-09 66.2 171 52.6
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 6.0e-09 65.9 171 45.0
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.3e-08 64.7 170 50.0
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 1.3e-08 64.7 220 42.7
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 5.1e-08 62.8 214 32.2
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 1.1e-07 61.6 186 44.1
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.1e-07 61.6 186 47.8
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 1.5e-07 61.2 203 44.8
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.5e-07 61.2 186 44.1
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 3.3e-07 60.1 183 44.3
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 3.3e-07 60.1 34 88.2
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 2.1e-06 57.4 163 46.6
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 3.6e-06 56.6 210 43.8


User provided reference genes

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