Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 0.0e+00 1150.6 575 100.0
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 9.1e-267 923.3 575 78.3
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 5.5e-264 914.1 575 76.5
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.6e-263 912.5 576 77.8
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.4e-256 886.7 575 77.0
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 3.0e-254 881.7 575 74.4
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 8.8e-254 880.2 574 76.1
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 5.7e-253 877.5 575 75.0
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.3e-252 876.3 575 75.1
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.1e-251 871.7 575 75.3
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.6e-250 869.4 575 74.8
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 4.5e-250 867.8 575 74.8
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.1e-248 863.2 574 73.9
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 9.4e-248 860.1 575 74.4
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 8.8e-246 853.6 575 73.0
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 9.7e-245 850.1 575 72.7
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.3e-244 849.7 578 74.7
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.8e-243 845.9 575 73.6
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.7e-242 842.0 586 73.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 2.7e-242 842.0 576 72.4
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.2e-241 839.0 577 73.0
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 6.5e-241 837.4 577 72.4
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.8e-238 829.3 576 70.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 5.2e-238 827.8 576 70.5
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.5e-237 826.2 576 70.1
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 4.4e-237 824.7 575 72.2
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 3.1e-235 818.5 576 70.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.1e-235 818.1 576 69.4
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 7.0e-235 817.4 576 70.3
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.2e-234 816.6 575 70.6
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 4.5e-234 814.7 575 69.9
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 5.9e-234 814.3 575 71.0
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 6.6e-233 810.8 575 69.4
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.1e-232 810.1 575 71.0
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.2e-231 806.6 570 70.0
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 3.6e-231 805.1 576 69.3
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 5.2e-230 801.2 594 69.0
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 6.8e-230 800.8 575 69.7
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.2e-229 800.0 576 70.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.3e-228 796.6 605 67.3
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.1e-227 793.5 517 77.8
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.3e-225 785.8 578 66.6
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.9e-224 782.7 575 67.8
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.9e-224 782.7 577 69.0
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.5e-224 782.3 575 67.8
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 2.1e-223 779.2 575 67.3
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.7e-223 778.1 575 68.5
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 3.1e-222 775.4 575 68.2
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 6.8e-222 774.2 604 64.4
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 6.8e-222 774.2 577 67.9
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.4e-221 771.9 576 64.9
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 3.7e-220 768.5 575 66.3
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.4e-219 766.5 577 66.9
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 7.0e-219 764.2 576 67.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 7.0e-219 764.2 577 66.6
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 9.2e-219 763.8 575 66.1
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 9.2e-219 763.8 575 64.2
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 3.5e-218 761.9 575 67.0
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 3.0e-217 758.8 576 65.6
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 5.0e-217 758.1 575 66.8
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 1.2e-215 753.4 576 66.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 5.2e-214 748.0 575 64.3
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.4e-213 745.3 575 66.3
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.9e-212 741.5 575 64.3
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 8.3e-212 740.7 575 65.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.7e-209 733.0 575 64.7
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 7.3e-208 727.6 578 63.8
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 2.3e-206 722.6 578 63.5
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 3.1e-206 722.2 604 62.6
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 6.8e-206 721.1 578 63.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 3.4e-205 718.8 577 63.1
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 5.8e-205 718.0 645 58.3
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.3e-204 716.8 578 63.3
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.1e-202 709.5 497 72.0
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 6.6e-201 704.5 578 62.6
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.5e-200 702.6 576 61.1
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 5.2e-198 694.9 533 66.0
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 8.4e-196 687.6 680 55.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.1e-195 687.2 533 65.9
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 5.4e-195 684.9 502 68.5
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.6e-194 683.3 440 78.0
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 7.3e-192 674.5 575 59.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.5e-189 666.8 577 59.1
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.5e-189 666.8 577 59.1
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-187 660.6 428 77.3
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.7e-185 653.3 577 56.8
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.7e-185 653.3 475 69.1
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 2.3e-185 652.9 577 58.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 2.3e-185 652.9 577 58.4
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.6e-185 651.4 577 58.2
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.1e-183 644.4 552 59.2
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 3.1e-182 642.5 553 59.5
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 4.3e-176 622.1 575 53.9
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.1e-174 617.5 551 58.3
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 2.1e-167 593.2 394 73.9
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.6e-165 586.3 424 69.8
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.6e-162 575.5 394 71.6
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 8.7e-161 571.2 499 60.7
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-151 540.0 472 62.1
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.5e-149 532.3 554 49.5
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.0e-144 516.9 581 49.2
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-140 504.2 368 68.5
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.9e-131 473.8 356 66.9
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.0e-130 468.4 461 52.5
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 4.5e-125 452.6 608 40.8
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 4.1e-118 429.5 297 71.0
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.0e-117 427.2 482 50.4
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 6.8e-113 412.1 580 41.7
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 4.9e-111 406.0 608 39.8
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 5.6e-75 286.2 245 58.8
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.1e-65 253.8 385 42.6
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 4.0e-65 253.4 297 48.1
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.1e-62 245.4 208 59.6
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.2e-62 243.8 160 75.0
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 2.9e-55 220.7 527 30.2
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 3.2e-38 164.1 217 46.5
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.8e-36 156.0 99 73.7
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 4.8e-34 150.2 150 50.7
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 8.2e-34 149.4 405 30.4
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.1e-33 149.1 463 25.9
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.4e-33 147.9 453 26.7
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 3.4e-32 144.1 130 56.9
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.9e-30 138.3 130 52.3
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 6.7e-28 129.8 74 78.4
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.4e-25 122.1 125 48.8
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.4e-25 122.1 125 48.8
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.1e-25 120.9 384 26.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.6e-24 117.9 73 80.8
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.8e-23 114.0 83 65.1
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 2.5e-22 111.3 89 60.7
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.4e-22 109.4 83 63.9
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 4.4e-19 100.5 261 31.8
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-15 89.4 68 63.2
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 8.5e-15 86.3 52 76.9
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 2.8e-10 71.2 45 71.1
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 6.3e-10 70.1 61 57.4
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.0e-08 65.1 51 58.8
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 1.0e-07 62.8 70 47.1


User provided reference genes

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