Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39862 Davidia involucrata HOM05D002458 ORTHO05D002603 3.7e-55 218.0 113 100.0
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 1.8e-30 136.0 113 68.1
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 2.2e-23 112.5 113 61.1
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 4.9e-23 111.3 102 63.7
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 6.4e-23 110.9 112 60.7
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.1e-22 110.2 115 56.5
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.8e-22 109.4 109 60.6
Ciclev10026611m.g Citrus clementina HOM05D002458 ORTHO05D002603 3.2e-22 108.6 116 52.6
Hma1.2p1_0461F.1_g157900 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 5.4e-22 107.8 114 59.6
Rhsim08G0101300 Rhododendron simsii HOM05D002458 ORTHO05D002603 2.7e-21 105.5 111 62.2
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.7e-20 102.8 111 55.0
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 3.0e-20 102.1 109 52.3
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 6.6e-20 100.9 115 52.2
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 1.5e-19 99.8 116 53.4
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.5e-19 99.8 117 51.3
Aqoxy6G01352 Aquilegia oxysepala HOM05D002458 ORTHO05D002603 1.9e-19 99.4 115 53.0
Hma1.2p1_0200F.1_g085920 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 1.9e-19 99.4 103 66.0
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.9e-19 99.4 108 55.6
Gohir.D11G198200 Gossypium hirsutum HOM05D002458 ORTHO05D002603 7.3e-19 97.4 117 56.4
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 9.5e-19 97.1 118 50.0
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.2e-18 96.7 114 52.6
Gorai.007G212200 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.6e-18 96.3 116 54.3
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 2.8e-18 95.5 114 51.8
FvH4_1g15910 Fragaria vesca HOM05D002458 ORTHO05D002603 3.6e-18 95.1 113 54.9
FAN19G0517 Fragaria x ananassa HOM05D002458 ORTHO05D002603 3.6e-18 95.1 113 54.9
FAN23G1767 Fragaria x ananassa HOM05D002458 ORTHO05D002603 3.6e-18 95.1 113 54.9
FAN28G2673 Fragaria x ananassa HOM05D002458 ORTHO05D002603 3.6e-18 95.1 113 54.9
Lj4g0013446 Lotus japonicus HOM05D002458 ORTHO05D002603 3.6e-18 95.1 111 49.5
MD15G1282400 Malus domestica HOM05D002458 ORTHO05D002603 3.6e-18 95.1 112 50.9
Gohir.A12G070600 Gossypium hirsutum HOM05D002458 ORTHO05D002603 4.7e-18 94.7 113 48.7
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 4.7e-18 94.7 115 53.0
FAN04G0719 Fragaria x ananassa HOM05D002458 ORTHO05D002603 6.2e-18 94.4 113 54.0
FAN12G1655 Fragaria x ananassa HOM05D002458 ORTHO05D002603 6.2e-18 94.4 113 54.0
FAN11G1855 Fragaria x ananassa HOM05D002458 ORTHO05D002603 8.0e-18 94.0 113 54.0
FAN16G2042 Fragaria x ananassa HOM05D002458 ORTHO05D002603 8.0e-18 94.0 113 54.0
FAN26G2469 Fragaria x ananassa HOM05D002458 ORTHO05D002603 8.0e-18 94.0 113 54.9
Gohir.D12G068500 Gossypium hirsutum HOM05D002458 ORTHO05D002603 8.0e-18 94.0 113 47.8
RcHm_v2.0_Chr2g0105301 Rosa chinensis HOM05D002458 ORTHO05D002603 8.0e-18 94.0 113 54.0
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 8.0e-18 94.0 114 50.0
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.1e-17 93.6 111 51.4
Gohir.A11G191400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.8e-17 92.8 114 56.1
Lalb_Chr09g0333771 Lupinus albus HOM05D002458 ORTHO05D002603 3.1e-17 92.0 115 49.6
vmacro17947 Vaccinium macrocarpon HOM05D002458 ORTHO05D002603 3.1e-17 92.0 99 62.6
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 4.0e-17 91.7 100 56.0
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 4.0e-17 91.7 112 49.1
Lj2g0015041 Lotus japonicus HOM05D002458 ORTHO05D002603 8.9e-17 90.5 111 50.5
Gorai.008G074900 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.2e-16 90.1 113 46.0
Cpa.g.sc55.162 Carica papaya HOM05D002458 ORTHO05D002603 1.5e-16 89.7 118 51.7
Duzib264G0584 Durio zibethinus HOM05D002458 ORTHO05D002603 4.4e-16 88.2 115 51.3
Lsat_1_v5_gn_4_166120 Lactuca sativa HOM05D002458 ORTHO05D002603 4.4e-16 88.2 117 47.9
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 7.5e-16 87.4 105 53.3
MD02G1170900 Malus domestica HOM05D002458 ORTHO05D002603 7.5e-16 87.4 113 51.3
HanXRQChr07g0191581 Helianthus annuus HOM05D002458 ORTHO05D002603 2.2e-15 85.9 108 51.9
Prupe.7G134700 Prunus persica HOM05D002458 ORTHO05D002603 2.9e-15 85.5 119 48.7
Medtr5g017580 Medicago truncatula HOM05D002458 ORTHO05D002603 3.7e-15 85.1 107 49.5
Cc07_g05940 Coffea canephora HOM05D002458 ORTHO05D002603 4.9e-15 84.7 79 67.1
Phvul.003G244300 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 4.9e-15 84.7 117 52.1
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 6.4e-15 84.3 104 52.9
Lalb_Chr05g0226601 Lupinus albus HOM05D002458 ORTHO05D002603 8.3e-15 84.0 119 47.9
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 8.3e-15 84.0 126 50.0
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 1.1e-14 83.6 110 48.2
Prupe.8G123500 Prunus persica HOM05D002458 ORTHO05D002603 1.9e-14 82.8 115 45.2
VMungo0251G2437 Vigna mungo HOM05D002458 ORTHO05D002603 1.9e-14 82.8 112 48.2
EL10Ac6g15758 Beta vulgaris HOM05D002458 ORTHO05D002603 2.4e-14 82.4 108 44.4
VMungo1215G2639 Vigna mungo HOM05D002458 ORTHO05D002603 4.1e-14 81.6 116 44.8
MD10G1093900 Malus domestica HOM05D002458 ORTHO05D002603 5.4e-14 81.3 115 43.5
Psat2g166160 Pisum sativum HOM05D002458 ORTHO05D002603 5.4e-14 81.3 106 45.3
TPR.G21290 Trifolium pratense HOM05D002458 ORTHO05D002603 7.0e-14 80.9 107 48.6
TWI09G0929 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 7.0e-14 80.9 112 50.0
AUR62003867 Chenopodium quinoa HOM05D002458 ORTHO05D002603 9.2e-14 80.5 105 42.9
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 1.6e-13 79.7 109 46.8
Ca_19502_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 3.5e-13 78.6 121 44.6
Lalb_Chr09g0323131 Lupinus albus HOM05D002458 ORTHO05D002603 3.5e-13 78.6 124 41.1
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 6.0e-13 77.8 109 46.8
Phvul.002G019400 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 7.8e-13 77.4 118 44.9
arahy.Tifrunner.gnm1.ann1.4FX07B Arachis hypogaea HOM05D002458 ORTHO05D002603 1.7e-12 76.3 115 47.8
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 2.3e-12 75.9 77 61.0
PGR102G2672 Punica granatum HOM05D002458 ORTHO05D002603 3.0e-12 75.5 118 50.0
Potri.004G141600 Populus trichocarpa HOM05D002458 ORTHO05D002603 3.9e-12 75.1 114 43.9
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 5.0e-12 74.7 78 59.0
SalBow1G7029 Salvia bowleyana HOM05D002458 ORTHO05D002603 6.6e-12 74.3 90 53.3
ECA232G2120 Erigeron canadensis HOM05D002458 ORTHO05D002603 8.6e-12 73.9 119 47.1
MD05G1079600 Malus domestica HOM05D002458 ORTHO05D002603 1.1e-11 73.6 82 46.3
Ah.02g124270 Amaranthus hybridus HOM05D002458 ORTHO05D002603 1.9e-11 72.8 106 42.5
Eucgr.H01652 Eucalyptus grandis HOM05D002458 ORTHO05D002603 1.9e-11 72.8 115 44.3
QL06p041771 Quercus lobata HOM05D002458 ORTHO05D002603 1.9e-11 72.8 106 53.8
arahy.Tifrunner.gnm1.ann1.U0D0WT Arachis hypogaea HOM05D002458 ORTHO05D002603 3.3e-11 72.0 122 45.1
CANSAT01G1685 Cannabis sativa HOM05D002458 ORTHO05D002603 4.3e-11 71.6 115 41.7
Glyma.01G185500 Glycine max HOM05D002458 ORTHO05D002603 4.3e-11 71.6 130 43.8
CDE04G3581 Ceratophyllum demersum HOM05D002458 ORTHO05D002603 7.3e-11 70.9 84 58.3
AUR62001940 Chenopodium quinoa HOM05D002458 ORTHO05D002603 7.3e-11 70.9 104 44.2
Eucgr.H02010 Eucalyptus grandis HOM05D002458 ORTHO05D002603 7.3e-11 70.9 115 43.5
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 7.3e-11 70.9 79 55.7
Potri.009G102800 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.2e-10 70.1 114 42.1
CiPaw.06G143400 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.6e-10 69.7 108 45.4
Sabra04G0093500 Salix brachista HOM05D002458 ORTHO05D002603 1.6e-10 69.7 93 47.3
Sabra09G0078700 Salix brachista HOM05D002458 ORTHO05D002603 1.6e-10 69.7 114 41.2
CAN.G836.76 Capsicum annuum HOM05D002458 ORTHO05D002603 3.6e-10 68.6 87 56.3
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 3.6e-10 68.6 112 39.3
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 3.6e-10 68.6 84 52.4
Eucgr.I00936 Eucalyptus grandis HOM05D002458 ORTHO05D002603 6.2e-10 67.8 78 53.8
PSO541G0955 Papaver somniferum HOM05D002458 ORTHO05D002603 6.2e-10 67.8 109 45.0
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 6.2e-10 67.8 79 50.6
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 6.2e-10 67.8 109 42.2
DCAR_010901 Daucus carota HOM05D001349 ORTHO05D008727 1.4e-09 66.6 80 51.2
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 2.3e-09 65.9 109 44.0
Ciclev10029915m.g Citrus clementina HOM05D002458 ORTHO05D002603 3.1e-09 65.5 105 39.0
CiPaw.05G051800 Carya illinoinensis HOM05D002458 ORTHO05D002603 5.2e-09 64.7 112 42.9
QL11p036042 Quercus lobata HOM05D002458 ORTHO05D002603 5.2e-09 64.7 113 42.5
Haze_01829 Corylus avellana HOM05D002458 ORTHO05D002603 1.2e-08 63.5 115 40.9
unitig_899.g14964 Utricularia gibba HOM05D002458 ORTHO05D002603 1.2e-08 63.5 74 47.3
Thecc.02G099600 Theobroma cacao HOM05D002458 ORTHO05D002603 1.5e-08 63.2 82 47.6
unitig_736.g22377 Utricularia gibba HOM05D002458 ORTHO05D002603 1.5e-08 63.2 75 48.0
Actinidia00445 Actinidia chinensis HOM05D002458 ORTHO05D002603 2.6e-08 62.4 85 41.2
MELO3C020898.2 Cucumis melo HOM05D002458 ORTHO05D002603 2.6e-08 62.4 125 40.0
CSS0050202 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 3.4e-08 62.0 85 48.2
Duzib052G0113 Durio zibethinus HOM05D002458 ORTHO05D002603 3.4e-08 62.0 100 45.0
Dinv42151 Davidia involucrata HOM05D002458 ORTHO05D002603 4.4e-08 61.6 73 50.7
Lalb_Chr16g0378491 Lupinus albus HOM05D002458 ORTHO05D002603 4.4e-08 61.6 87 51.7
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 5.8e-08 61.2 82 42.7
SGA_v2.0_scaffold204G41574 Striga asiatica HOM05D002458 ORTHO05D002603 7.5e-08 60.8 83 45.8
FvH4_2g06210 Fragaria vesca HOM05D002458 ORTHO05D002603 9.9e-08 60.5 102 41.2
FAN15G1604 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.9e-08 60.5 102 41.2
FAN20G0269 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.9e-08 60.5 102 41.2
FAN24G3116 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.9e-08 60.5 102 41.2
Aqoxy5G01250 Aquilegia oxysepala HOM05D002458 ORTHO05D002603 1.3e-07 60.1 116 39.7
ClCG02G012800 Citrullus lanatus HOM05D002458 ORTHO05D002603 1.3e-07 60.1 128 35.9
Glyma.07G211700 Glycine max HOM05D002458 ORTHO05D002603 1.3e-07 60.1 83 43.4
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 1.3e-07 60.1 83 43.4
Sc16g0004800 Simmondsia chinensis HOM05D002458 ORTHO05D002603 1.3e-07 60.1 90 46.7
FAN27G1641 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.7e-07 59.7 102 41.2
RcHm_v2.0_Chr6g0256981 Rosa chinensis HOM05D002458 ORTHO05D002603 1.7e-07 59.7 96 40.6
Aa31LG1G15350 Aethionema arabicum HOM05D002458 ORTHO05D002603 2.2e-07 59.3 92 44.6
Duzib248G1687 Durio zibethinus HOM05D002458 ORTHO05D002603 2.2e-07 59.3 107 45.8
Migut.H00441 Erythranthe guttata HOM05D002458 ORTHO05D002603 2.2e-07 59.3 98 42.9
Lalb_Chr16g0384661 Lupinus albus HOM05D002458 ORTHO05D002603 2.2e-07 59.3 110 36.4
Cfa005475 Carpinus fangiana HOM05D002458 ORTHO05D002603 3.7e-07 58.5 108 40.7
Aa31LG4G18810 Aethionema arabicum HOM05D002458 ORTHO05D002603 4.9e-07 58.2 95 41.1
CSS0005083 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 4.9e-07 58.2 78 48.7
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 4.9e-07 58.2 84 50.0
Glyma.11G056600 Glycine max HOM05D002458 ORTHO05D002603 4.9e-07 58.2 79 44.3
arahy.Tifrunner.gnm1.ann1.Z85DSV Arachis hypogaea HOM05D002458 ORTHO05D002603 6.4e-07 57.8 93 37.6
MELO3C019512.2 Cucumis melo HOM05D002458 ORTHO05D002603 6.4e-07 57.8 83 43.4
Glyma.02G133300 Glycine max HOM05D002458 ORTHO05D002603 6.4e-07 57.8 83 42.2
Gohir.A03G189800 Gossypium hirsutum HOM05D002458 ORTHO05D002603 6.4e-07 57.8 97 40.2
Gohir.D02G210400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 6.4e-07 57.8 97 40.2
Gorai.005G238400 Gossypium raimondii HOM05D002458 ORTHO05D002603 6.4e-07 57.8 97 40.2
Peaxi162Scf00003g02325 Petunia axillaris HOM05D002458 ORTHO05D002603 6.4e-07 57.8 68 54.4
Atru.chr5.2728 Acer truncatum HOM05D002458 ORTHO05D002603 8.3e-07 57.4 84 45.2
HPP92_016727 Vanilla planifolia HOM05D002458 ORTHO05D002603 1.1e-06 57.0 77 46.8
Migut.B00340 Erythranthe guttata HOM05D002458 ORTHO05D002603 1.4e-06 56.6 81 46.9
Nitab4.5_0001034g0120 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.4e-06 56.6 104 43.3
MSTRG.20151 Avicennia marina HOM05D002458 ORTHO05D002603 1.9e-06 56.2 75 40.0
CsaV3_3G018550 Cucumis sativus L. HOM05D002458 ORTHO05D002603 1.9e-06 56.2 85 41.2
BraSC56t46389Z Brassica rapa HOM05D003370 ORTHO05D003848 3.2e-06 55.5 84 35.7
Dinv23616 Davidia involucrata HOM05D002458 ORTHO05D002603 3.2e-06 55.5 85 43.5
Oeu013702.1 Olea europaea HOM05D002458 ORTHO05D002603 3.2e-06 55.5 91 44.0
AL8G44650 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 4.1e-06 55.1 87 43.7
BcaB04g20102 Brassica carinata HOM05D002458 ORTHO05D002603 4.1e-06 55.1 83 43.4
BcaC04g23161 Brassica carinata HOM05D002458 ORTHO05D002603 5.4e-06 54.7 84 45.2
C09p11530 Brassica napus HOM05D002458 ORTHO05D002603 5.4e-06 54.7 84 45.2
BolC9t54044H Brassica oleracea HOM05D002458 ORTHO05D002603 5.4e-06 54.7 84 45.2
BraA09t36624Z Brassica rapa HOM05D002458 ORTHO05D002603 5.4e-06 54.7 84 45.2
PSO210G6961 Papaver somniferum HOM05D002458 ORTHO05D002603 5.4e-06 54.7 87 41.4
BcaB02g09989 Brassica carinata HOM05D002458 ORTHO05D002603 7.1e-06 54.3 87 42.5
Sed0018653 Sechium edule HOM05D002458 ORTHO05D002603 7.1e-06 54.3 82 40.2
Zm00001eb100860 Zea mays HOM05D002458 ORTHO05D002603 7.1e-06 54.3 78 44.9
PSO170G0732 Papaver somniferum HOM05D002458 ORTHO05D002603 9.2e-06 53.9 87 41.4
Sp2g29880 Schrenkiella parvula HOM05D002458 ORTHO05D002603 9.2e-06 53.9 89 41.6


User provided reference genes

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