Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 7.1e-53 210.3 104 100.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.6e-42 174.1 98 84.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.9e-37 159.1 98 76.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-36 156.0 98 77.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.3e-35 152.1 98 74.5
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.0e-35 151.8 98 74.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.9e-35 151.4 98 72.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.3e-34 147.9 98 67.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.6e-34 147.5 101 70.3
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.6e-34 147.5 98 72.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 5.6e-34 147.5 98 70.4
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 9.6e-34 146.7 101 69.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 9.6e-34 146.7 101 69.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 9.6e-34 146.7 98 70.4
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 9.6e-34 146.7 98 72.4
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-33 146.0 98 71.4
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-33 146.0 98 70.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.1e-33 145.6 98 70.4
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.7e-33 144.8 98 71.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 3.7e-33 144.8 98 68.4
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.8e-33 144.4 98 70.4
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.8e-33 144.4 98 71.4
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.2e-33 144.1 98 72.4
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 6.2e-33 144.1 98 72.4
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 6.2e-33 144.1 98 72.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.1e-33 143.7 98 69.4
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.1e-32 143.3 98 72.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.1e-32 143.3 98 72.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.4e-32 142.9 98 74.5
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.4e-32 142.9 98 71.4
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.4e-32 142.9 98 71.4
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.4e-32 142.9 98 70.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.8e-32 142.5 98 69.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.0e-32 141.4 98 68.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 5.3e-32 141.0 98 67.3
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 6.9e-32 140.6 98 70.4
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-31 139.8 99 69.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-31 139.8 99 69.7
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-31 139.8 99 69.7
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-31 139.8 99 69.7
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.2e-31 139.8 97 69.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.4e-31 138.3 98 65.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.8e-31 137.5 95 69.5
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.8e-31 137.5 98 63.3
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.6e-31 137.1 98 66.3
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.6e-31 137.1 98 62.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 7.6e-31 137.1 98 64.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.0e-30 136.7 102 64.7
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.7e-30 136.0 98 71.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.2e-30 135.6 98 70.4
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.2e-30 135.6 98 62.2
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.9e-30 135.2 98 65.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.9e-30 135.2 98 71.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.8e-30 134.8 98 67.3
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 3.8e-30 134.8 98 66.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.9e-30 134.4 98 71.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 6.5e-30 134.0 98 67.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.5e-30 134.0 98 62.2
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.5e-30 134.0 98 70.4
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 6.5e-30 134.0 99 67.7
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 8.4e-30 133.7 98 66.3
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 8.4e-30 133.7 98 67.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.1e-29 133.3 98 68.4
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.9e-29 132.5 98 64.3
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.9e-29 132.5 98 64.3
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.9e-29 132.5 97 63.9
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.5e-29 132.1 98 64.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.2e-29 131.7 98 68.4
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.2e-29 131.3 98 64.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.5e-29 131.0 98 66.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 9.3e-29 130.2 98 59.2
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 9.3e-29 130.2 95 66.3
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 9.3e-29 130.2 95 67.4
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.2e-28 129.8 97 63.9
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.6e-28 129.4 96 68.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.1e-28 129.0 98 62.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.7e-28 128.6 97 60.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 6.0e-28 127.5 98 68.4
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-27 125.6 98 60.2
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.0e-27 125.2 97 63.9
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 8.7e-27 123.6 98 58.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.1e-26 123.2 97 59.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.9e-26 122.5 100 63.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.9e-26 122.5 101 60.4
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.5e-26 122.1 95 62.1
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.5e-26 122.1 98 59.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 7.4e-26 120.6 98 60.2
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.1e-25 119.0 98 60.2
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 6.2e-25 117.5 98 60.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.1e-24 116.7 98 58.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.1e-24 116.7 98 58.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.4e-24 116.3 98 56.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.8e-24 115.9 98 57.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.8e-24 115.9 98 56.1
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.4e-24 115.5 102 59.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.1e-24 115.2 99 58.6
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.1e-24 114.8 99 59.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 9.0e-24 113.6 98 55.1
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 9.0e-24 113.6 97 58.8
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.2e-23 113.2 97 56.7
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 7.6e-23 110.5 98 54.1
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.6e-23 110.5 99 56.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.0e-22 110.2 97 55.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.0e-22 110.2 98 54.1
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.9e-22 108.6 98 55.1
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.8e-22 108.2 97 53.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 5.0e-22 107.8 97 54.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 8.4e-22 107.1 98 54.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-21 106.7 97 50.5
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.5e-21 105.5 97 52.6
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.2e-21 104.8 98 50.0
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.2e-21 104.8 98 52.0
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 5.5e-21 104.4 97 53.6
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.2e-21 104.0 100 57.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.3e-21 103.6 95 49.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 9.3e-21 103.6 101 49.5
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.2e-20 103.2 95 55.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-20 102.8 99 53.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.7e-20 102.1 98 49.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.7e-20 102.1 99 55.6
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.5e-20 101.7 100 56.0
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 4.6e-20 101.3 97 55.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.1e-20 100.9 97 52.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.9e-20 100.5 100 55.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.0e-19 100.1 95 53.7
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.1e-18 96.7 72 62.5
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.8e-17 91.3 101 48.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.3e-17 90.9 92 48.9
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 8.2e-17 90.5 97 47.4
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.4e-16 89.7 95 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.9e-16 87.4 92 46.7
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.7e-14 82.8 80 52.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.7e-14 82.8 97 46.4
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.1e-13 80.1 98 40.8
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 7.2e-13 77.4 99 42.4
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.0e-11 72.0 65 49.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.3e-09 66.6 99 35.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.2e-09 65.9 98 40.8


User provided reference genes

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