Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39838 Davidia involucrata HOM05D004780 ORTHO05D005590 2.1e-51 205.3 98 100.0
Dinv29994 Davidia involucrata HOM05D004780 ORTHO05D005590 2.2e-32 142.1 99 75.8
GSVIVG01022118001 Vitis vinifera HOM05D004780 ORTHO05D005590 7.2e-23 110.5 98 63.3
CSS0043615 Camellia sinensis var. sinensis HOM05D004780 ORTHO05D005590 1.2e-22 109.8 92 64.1
TAR628G0259 Trochodendron aralioides HOM05D004780 ORTHO05D005590 4.0e-21 104.8 99 62.6
CiPaw.01G017400 Carya illinoinensis HOM05D004780 ORTHO05D005590 5.2e-21 104.4 102 58.8
Phvul.002G018200 Phaseolus vulgaris HOM05D004780 ORTHO05D005590 1.5e-20 102.8 100 57.0
Hma1.2p1_0017F.1_g011460 Hydrangea macrophylla HOM05D004780 ORTHO05D005590 2.0e-20 102.4 101 57.4
TAR376G0922 Trochodendron aralioides HOM05D004780 ORTHO05D005590 5.7e-20 100.9 97 57.7
Nn1g04822 Nelumbo nucifera HOM05D004780 ORTHO05D005590 9.7e-20 100.1 99 55.6
MBI16_g18335_MAGBIO Magnolia biondii HOM05D004780 ORTHO05D005590 2.8e-19 98.6 103 50.5
CANSAT01G1455 Cannabis sativa HOM05D004780 ORTHO05D005590 3.7e-19 98.2 91 58.2
Glyma.11G055200 Glycine max HOM05D004780 ORTHO05D005590 1.1e-18 96.7 90 58.9
ClCG02G013230 Citrullus lanatus HOM05D003142 ORTHO05D003600 1.4e-18 96.3 100 56.0
Haze_15389 Corylus avellana HOM05D004780 ORTHO05D005590 1.4e-18 96.3 99 55.6
Haze_15390 Corylus avellana HOM05D004780 ORTHO05D005590 1.4e-18 96.3 99 55.6
Medtr5g017160 Medicago truncatula HOM05D004780 ORTHO05D005590 1.4e-18 96.3 100 55.0
Ca_24764_v3 Cicer arietinum L. HOM05D004780 ORTHO05D005590 3.1e-18 95.1 100 55.0
MELO3C020932.2 Cucumis melo HOM05D004780 ORTHO05D005590 4.1e-18 94.7 100 57.0
Duzib187G0281 Durio zibethinus HOM05D004780 ORTHO05D005590 4.1e-18 94.7 102 53.9
Thecc.01G057500 Theobroma cacao HOM05D004780 ORTHO05D005590 4.1e-18 94.7 104 54.8
Lalb_Chr09g0323221 Lupinus albus HOM05D004780 ORTHO05D005590 7.0e-18 94.0 111 52.3
Nn5g30267 Nelumbo nucifera HOM05D004780 ORTHO05D005590 9.1e-18 93.6 97 54.6
Gohir.A12G071800 Gossypium hirsutum HOM05D004780 ORTHO05D005590 3.5e-17 91.7 102 52.9
Gohir.D12G069800 Gossypium hirsutum HOM05D004780 ORTHO05D005590 4.5e-17 91.3 102 52.9
Cfa004029 Carpinus fangiana HOM05D004780 ORTHO05D005590 7.7e-17 90.5 98 52.0
CsaV3_2G017290 Cucumis sativus L. HOM05D004780 ORTHO05D005590 7.7e-17 90.5 100 55.0
Prupe.7G132200 Prunus persica HOM05D004780 ORTHO05D005590 7.7e-17 90.5 107 52.3
Lj2g0001321 Lotus japonicus HOM05D004780 ORTHO05D005590 1.3e-16 89.7 76 65.8
MD02G1173500 Malus domestica HOM05D004780 ORTHO05D005590 1.7e-16 89.4 96 57.3
Actinidia22642 Actinidia chinensis HOM05D004780 ORTHO05D005590 2.2e-16 89.0 103 53.4
Glyma.01G186800 Glycine max HOM05D004780 ORTHO05D005590 2.2e-16 89.0 102 53.9
Gorai.008G076900 Gossypium raimondii HOM05D004780 ORTHO05D005590 2.2e-16 89.0 102 52.0
Sabra14G0018400 Salix brachista HOM05D004780 ORTHO05D005590 2.2e-16 89.0 86 53.5
Duzib147G1343 Durio zibethinus HOM05D004780 ORTHO05D005590 2.9e-16 88.6 103 49.5
TPR.G30700 Trifolium pratense HOM05D004780 ORTHO05D005590 2.9e-16 88.6 73 63.0
TWI73G0829 Tripterygium wilfordii HOM05D004780 ORTHO05D005590 2.9e-16 88.6 92 52.2
MD15G1285000 Malus domestica HOM05D004780 ORTHO05D005590 5.0e-16 87.8 106 51.9
Thecc.08G004700 Theobroma cacao HOM05D004780 ORTHO05D005590 5.0e-16 87.8 97 51.5
CiPaw.02G007900 Carya illinoinensis HOM05D004780 ORTHO05D005590 6.5e-16 87.4 106 51.9
Oeu047214.1 Olea europaea HOM05D004780 ORTHO05D005590 6.5e-16 87.4 100 54.0
Manes.13G123500 Manihot esculenta HOM05D004780 ORTHO05D005590 8.5e-16 87.0 95 51.6
arahy.Tifrunner.gnm1.ann1.HINR4A Arachis hypogaea HOM05D004780 ORTHO05D005590 1.1e-15 86.7 94 57.4
Manes.12G103411 Manihot esculenta HOM05D004780 ORTHO05D005590 1.1e-15 86.7 108 49.1
TWI09G1123 Tripterygium wilfordii HOM05D004780 ORTHO05D005590 1.5e-15 86.3 109 50.5
arahy.Tifrunner.gnm1.ann1.P7PSM7 Arachis hypogaea HOM05D004780 ORTHO05D005590 1.9e-15 85.9 112 51.8
COL.COLO4_11434 Corchorus olitorius HOM05D004780 ORTHO05D005590 3.2e-15 85.1 96 50.0
QL06p041210 Quercus lobata HOM05D004780 ORTHO05D005590 3.2e-15 85.1 97 52.6
Lsat_1_v5_gn_4_165900 Lactuca sativa HOM05D004780 ORTHO05D005590 7.2e-15 84.0 105 49.5
Oeu062445.1 Olea europaea HOM05D004780 ORTHO05D005590 9.4e-15 83.6 100 50.0
Potri.014G026900 Populus trichocarpa HOM05D004780 ORTHO05D005590 9.4e-15 83.6 80 51.2
Rhsim08G0100100 Rhododendron simsii HOM05D004780 ORTHO05D005590 9.4e-15 83.6 75 64.0
Cpa.g.sc55.141 Carica papaya HOM05D004780 ORTHO05D005590 1.2e-14 83.2 90 52.2
Gohir.A10G091700 Gossypium hirsutum HOM05D004780 ORTHO05D005590 1.6e-14 82.8 108 53.7
Gohir.D11G199700 Gossypium hirsutum HOM05D004780 ORTHO05D005590 2.1e-14 82.4 103 50.5
Gorai.007G213800 Gossypium raimondii HOM05D004780 ORTHO05D005590 2.1e-14 82.4 103 50.5
Ciclev10026759m.g Citrus clementina HOM05D004780 ORTHO05D005590 2.7e-14 82.0 68 60.3
FAN26G1593 Fragaria x ananassa HOM05D004780 ORTHO05D005590 2.7e-14 82.0 109 50.5
Psat2g166520 Pisum sativum HOM05D004780 ORTHO05D005590 2.7e-14 82.0 90 50.0
Atru.chr3.312 Acer truncatum HOM05D004780 ORTHO05D005590 3.6e-14 81.6 115 47.0
Actinidia23291 Actinidia chinensis HOM05D004780 ORTHO05D005590 3.6e-14 81.6 103 50.5
Nn1g03799 Nelumbo nucifera HOM05D004780 ORTHO05D005590 4.7e-14 81.3 61 63.9
Sed0013836 Sechium edule HOM05D004780 ORTHO05D005590 4.7e-14 81.3 78 55.1
FAN28G0806 Fragaria x ananassa HOM05D004780 ORTHO05D005590 6.1e-14 80.9 108 50.0
Gohir.A11G192920 Gossypium hirsutum HOM05D004780 ORTHO05D005590 8.0e-14 80.5 103 49.5
PSO210G3073 Papaver somniferum HOM05D004780 ORTHO05D005590 8.0e-14 80.5 99 49.5
Duzib116G0051 Durio zibethinus HOM05D004780 ORTHO05D005590 1.0e-13 80.1 87 50.6
FvH4_1g16140 Fragaria vesca HOM05D004780 ORTHO05D005590 1.0e-13 80.1 109 49.5
FAN19G0458 Fragaria x ananassa HOM05D004780 ORTHO05D005590 1.0e-13 80.1 109 49.5
RcHm_v2.0_Chr2g0105821 Rosa chinensis HOM05D004780 ORTHO05D005590 1.0e-13 80.1 108 50.0
FAN23G0585 Fragaria x ananassa HOM05D004780 ORTHO05D005590 2.3e-13 79.0 94 48.9
MSTRG.2874 Avicennia marina HOM05D004780 ORTHO05D005590 4.0e-13 78.2 94 50.0
Potri.007G044700 Populus trichocarpa HOM05D004780 ORTHO05D005590 6.8e-13 77.4 98 49.0
Rhsim06G0051700 Rhododendron simsii HOM05D004780 ORTHO05D005590 6.8e-13 77.4 92 46.7
Hma1.2p1_0360F.1_g135640 Hydrangea macrophylla HOM05D004780 ORTHO05D005590 8.8e-13 77.0 77 58.4
Aqoxy5G01213 Aquilegia oxysepala HOM05D004780 ORTHO05D005590 1.2e-12 76.6 64 65.6
Nitab4.5_0003298g0030 Nicotiana tabacum HOM05D004780 ORTHO05D005590 2.0e-12 75.9 95 47.4
Potri.005G139100 Populus trichocarpa HOM05D004780 ORTHO05D005590 2.0e-12 75.9 98 50.0
HanXRQChr15g0490381 Helianthus annuus HOM05D004780 ORTHO05D005590 4.4e-12 74.7 103 45.6
Oeu023858.1 Olea europaea HOM05D004780 ORTHO05D005590 4.4e-12 74.7 77 51.9
Sabra07G0039600 Salix brachista HOM05D004780 ORTHO05D005590 5.7e-12 74.3 104 48.1
Cc07_g06070 Coffea canephora HOM05D004780 ORTHO05D005590 7.5e-12 73.9 113 41.6
DCAR_012782 Daucus carota HOM05D004780 ORTHO05D005590 7.5e-12 73.9 78 48.7
PGR102G2467 Punica granatum HOM05D004780 ORTHO05D005590 7.5e-12 73.9 102 51.0
Peaxi162Scf01113g00005 Petunia axillaris HOM05D004780 ORTHO05D005590 9.8e-12 73.6 98 49.0
A09p44560 Brassica napus HOM05D004780 ORTHO05D005590 1.7e-11 72.8 100 43.0
Sabra05G0111700 Salix brachista HOM05D004780 ORTHO05D005590 1.7e-11 72.8 107 44.9
Peaxi162Scf00450g00215 Petunia axillaris HOM05D004780 ORTHO05D005590 2.8e-11 72.0 95 45.3
Sp2g29610 Schrenkiella parvula HOM05D004780 ORTHO05D005590 2.8e-11 72.0 102 45.1
Aa31LG1G15590 Aethionema arabicum HOM05D004780 ORTHO05D005590 4.8e-11 71.2 97 40.2
AL8G44300 Arabidopsis lyrata HOM05D004780 ORTHO05D005590 4.8e-11 71.2 96 40.6
MSTRG.24340 Avicennia marina HOM05D004780 ORTHO05D005590 4.8e-11 71.2 109 41.3
Carub.0008s2744 Capsella rubella HOM05D004780 ORTHO05D005590 4.8e-11 71.2 102 40.2
CDE06G1121 Ceratophyllum demersum HOM05D000895 ORTHO05D005590 4.8e-11 71.2 91 45.1
COL.COLO4_26533 Corchorus olitorius HOM05D004780 ORTHO05D005590 4.8e-11 71.2 95 45.3
Ah.03g145230 Amaranthus hybridus HOM05D004780 ORTHO05D005590 8.3e-11 70.5 106 43.4
AT5G67070 Arabidopsis thaliana HOM05D004780 ORTHO05D005590 8.3e-11 70.5 105 41.9
Nitab4.5_0005144g0020 Nicotiana tabacum HOM05D004780 ORTHO05D005590 8.3e-11 70.5 97 41.2
BcaB02g09961 Brassica carinata HOM05D004780 ORTHO05D005590 1.1e-10 70.1 102 39.2
BolC7t42989H Brassica oleracea HOM05D004780 ORTHO05D005590 1.1e-10 70.1 100 42.0
BraA07t29414Z Brassica rapa HOM05D004780 ORTHO05D005590 1.1e-10 70.1 100 40.0
C09p11270 Brassica napus HOM05D004780 ORTHO05D005590 1.4e-10 69.7 98 43.9
CARHR280580 Cardamine hirsuta HOM05D004780 ORTHO05D005590 1.4e-10 69.7 101 39.6
Lsat_1_v5_gn_3_89200 Lactuca sativa HOM05D004780 ORTHO05D005590 1.4e-10 69.7 91 50.5
BraA09t36602Z Brassica rapa HOM05D004780 ORTHO05D005590 1.8e-10 69.3 93 41.9
BcaB04g20074 Brassica carinata HOM05D004780 ORTHO05D005590 2.4e-10 68.9 92 41.3
BcaC06g34786 Brassica carinata HOM05D004780 ORTHO05D005590 2.4e-10 68.9 100 41.0
Sc16g0004670 Simmondsia chinensis HOM05D004780 ORTHO05D005590 2.4e-10 68.9 96 46.9
HPP92_016141 Vanilla planifolia HOM05D004780 ORTHO05D005590 2.4e-10 68.9 107 42.1
ATR0584G062 Amborella trichopoda HOM05D004780 ORTHO05D005590 3.1e-10 68.6 86 51.2
BcaC04g23192 Brassica carinata HOM05D004780 ORTHO05D005590 3.1e-10 68.6 92 40.2
BolC9t54016H Brassica oleracea HOM05D004780 ORTHO05D005590 3.1e-10 68.6 92 40.2
Migut.H00425 Erythranthe guttata HOM05D004780 ORTHO05D005590 4.1e-10 68.2 93 43.0
THA.LOC104827176 Tarenaya hassleriana HOM05D004780 ORTHO05D005590 4.1e-10 68.2 101 44.6
A07p16880 Brassica napus HOM05D004780 ORTHO05D005590 5.4e-10 67.8 100 39.0
Thhalv10005130m.g Eutrema salsugineum HOM05D004780 ORTHO05D005590 5.4e-10 67.8 97 43.3
A09p09540 Brassica napus HOM05D004780 ORTHO05D005590 7.0e-10 67.4 93 40.9
BolC2t12525H Brassica oleracea HOM05D004780 ORTHO05D005590 7.0e-10 67.4 76 46.1
ECA232G3279 Erigeron canadensis HOM05D004780 ORTHO05D005590 9.1e-10 67.0 91 45.1
Gorai.011G105900 Gossypium raimondii HOM05D004780 ORTHO05D005590 1.2e-09 66.6 116 44.0
Gohir.D10G096600 Gossypium hirsutum HOM05D004780 ORTHO05D005590 1.6e-09 66.2 113 45.1
BcaC03g18389 Brassica carinata HOM05D004780 ORTHO05D005590 2.0e-09 65.9 76 44.7
C02p64650 Brassica napus HOM05D004780 ORTHO05D005590 2.0e-09 65.9 76 44.7
SGA_v2.0_scaffold14G06992 Striga asiatica HOM05D004780 ORTHO05D005590 2.0e-09 65.9 92 42.4
PGSC0003DMG400004038 Solanum tuberosum HOM05D004780 ORTHO05D005590 2.7e-09 65.5 94 44.7
Gorai.010G020800 Gossypium raimondii HOM05D004780 ORTHO05D005590 3.5e-09 65.1 95 47.4
EL10Ac6g15736 Beta vulgaris HOM05D004780 ORTHO05D005590 5.9e-09 64.3 107 38.3
Gohir.A06G019500 Gossypium hirsutum HOM05D004780 ORTHO05D005590 1.0e-08 63.5 95 47.4
HanXRQChr12g0381281 Helianthus annuus HOM05D004780 ORTHO05D005590 1.0e-08 63.5 100 47.0
PSO675G8229 Papaver somniferum HOM05D004780 ORTHO05D005590 1.0e-08 63.5 81 45.7
Atru.chr13.715 Acer truncatum HOM05D004780 ORTHO05D005590 3.8e-08 61.6 99 46.5
Gohir.D06G017900 Gossypium hirsutum HOM05D004780 ORTHO05D005590 6.5e-08 60.8 95 45.3
THA.LOC104819237 Tarenaya hassleriana HOM05D004780 ORTHO05D005590 8.5e-08 60.5 106 34.9
CAN.G370.56 Capsicum annuum HOM05D004780 ORTHO05D005590 1.5e-07 59.7 46 58.7
Sopen02g035610 Solanum pennellii HOM05D004780 ORTHO05D005590 1.9e-07 59.3 93 39.8
DCAR_010886 Daucus carota HOM05D004780 ORTHO05D005590 2.5e-07 58.9 106 42.5
Solyc02g090960.1 Solanum lycopersicum HOM05D004780 ORTHO05D005590 2.5e-07 58.9 90 43.3
SalBow6G6817 Salvia bowleyana HOM05D004780 ORTHO05D005590 5.5e-07 57.8 31 80.6
PSO541G4783 Papaver somniferum HOM05D004780 ORTHO05D005590 7.2e-07 57.4 47 55.3
unitig_899.g14944 Utricularia gibba HOM05D004780 ORTHO05D005590 9.4e-07 57.0 90 38.9
Migut.N02720 Erythranthe guttata HOM05D004780 ORTHO05D005590 3.6e-06 55.1 99 37.4
Manes.18G038800 Manihot esculenta HOM05D004780 ORTHO05D005590 8.0e-06 53.9 69 47.8


User provided reference genes

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