Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1547.7 777 100.0
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1295.0 776 82.7
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1295.0 776 82.7
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1269.2 777 81.1
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1261.9 777 80.4
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1253.8 777 79.7
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1231.5 868 73.2
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 0.0e+00 1228.4 777 79.9
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1224.5 778 77.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1218.8 779 78.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1218.4 778 77.9
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1215.3 777 76.8
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1213.7 795 76.5
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1213.0 778 77.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1211.1 775 77.8
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1211.1 778 77.9
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1210.7 788 77.0
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1209.5 779 77.4
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1208.7 778 76.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1203.7 777 77.2
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1191.0 778 75.7
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1190.6 782 75.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1186.4 777 75.4
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1185.2 777 75.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1185.2 775 76.6
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1169.5 777 75.2
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1167.9 777 75.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1166.0 779 74.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1160.2 780 72.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 0.0e+00 1158.3 777 74.8
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1156.7 778 74.7
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1154.4 778 73.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1149.8 789 71.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1149.4 778 72.1
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1146.3 780 73.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1146.0 773 75.2
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1146.0 778 72.8
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 0.0e+00 1138.6 778 71.7
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 0.0e+00 1137.5 781 73.6
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1137.1 780 73.7
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1133.2 750 75.7
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1132.9 778 72.2
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1132.5 880 66.5
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 0.0e+00 1130.5 783 74.2
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1129.8 837 68.9
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 0.0e+00 1128.2 779 72.8
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1125.5 777 72.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1121.7 776 72.7
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 0.0e+00 1118.6 784 73.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1118.2 778 70.7
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 0.0e+00 1108.6 778 71.6
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1105.5 803 68.2
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1102.4 778 70.2
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1101.7 771 71.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1101.3 778 70.2
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1100.5 778 70.6
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1097.8 778 70.1
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1096.3 780 71.8
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 0.0e+00 1091.6 879 64.8
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1091.3 771 69.4
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 0.0e+00 1087.8 777 69.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1081.6 778 68.9
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 0.0e+00 1080.5 777 70.7
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 778 68.6
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 5.3e-312 1073.9 777 68.5
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.1e-311 1073.2 772 68.7
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.6e-311 1072.4 771 68.4
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 4.8e-311 1070.8 772 68.7
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.8e-310 1068.9 781 67.9
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.1e-310 1068.1 771 68.0
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 6.9e-310 1067.0 774 71.4
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.2e-309 1066.2 722 74.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.4e-309 1064.7 778 68.0
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 777 69.4
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 777 69.2
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.1e-304 1049.7 740 71.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.9e-304 1048.9 771 67.2
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 4.0e-302 1041.2 772 66.8
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 6.9e-302 1040.4 798 65.9
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 5.1e-297 1024.2 779 67.0
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.5e-296 1022.7 776 66.1
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 4.5e-293 1011.1 783 65.3
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.0e-281 971.8 745 65.2
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 5.5e-267 924.5 784 61.4
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 5.3e-262 907.9 771 61.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.1e-259 900.2 793 59.3
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.5e-235 819.3 538 77.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.6e-228 794.7 540 72.6
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 9.2e-222 774.2 771 52.0
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-216 757.3 508 72.6
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 7.3e-211 738.0 479 77.7
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 6.0e-197 691.8 774 51.0
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 8.4e-191 671.4 595 59.7
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-187 659.4 426 74.9
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 3.0e-164 583.2 791 42.9
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.8e-161 573.9 507 64.3
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 5.3e-161 572.4 506 59.9
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.5e-159 565.1 790 41.9
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.3e-153 545.8 404 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 2.0e-120 437.6 759 36.9
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.3e-111 407.5 443 52.4
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 6.2e-109 399.4 831 32.7
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.3e-106 391.7 378 53.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 8.3e-106 389.0 448 49.8
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-92 345.1 256 68.0
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.8e-92 344.7 381 50.4
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.8e-92 342.8 190 81.1
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 2.4e-84 317.8 266 61.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.0e-76 289.3 182 78.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.6e-75 287.7 229 62.0
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.6e-72 278.5 392 40.1
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 9.0e-60 236.1 770 27.1
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.6e-54 216.1 174 68.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.1e-46 192.6 323 40.2
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 1.5e-46 192.2 228 47.8
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.8e-36 158.7 479 26.1
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 3.1e-36 157.9 260 37.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.1e-36 157.5 88 84.1
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 3.4e-35 154.5 104 66.3
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-34 152.5 127 63.0
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-34 151.8 88 81.8
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.1e-33 149.4 164 51.8
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.2e-32 146.0 88 79.5
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.8e-31 142.1 502 25.1
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 6.7e-31 140.2 86 76.7
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 8.8e-31 139.8 123 55.3
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-30 139.0 84 79.8
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.7e-29 135.6 71 87.3
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 3.7e-29 134.4 506 23.1
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 6.3e-29 133.7 109 58.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 1.8e-28 132.1 335 33.1
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.1e-28 131.0 90 67.8
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.6e-27 128.3 90 72.2
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.2e-26 125.2 61 95.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.1e-25 122.9 88 70.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-24 117.9 79 74.7
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 4.0e-23 114.4 61 88.5
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 6.7e-23 113.6 61 80.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.8e-21 107.5 61 85.2
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.0e-20 103.6 55 87.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-19 102.1 88 62.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.5e-18 97.1 55 85.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.5e-18 97.1 55 85.5
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.5e-17 94.0 61 70.5
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.0e-15 89.7 82 57.3
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 4.0e-15 87.8 78 52.6
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-14 86.3 55 69.1
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-14 85.9 55 69.1
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 3.4e-14 84.7 80 51.2
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.5e-14 83.6 61 63.9
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.8e-13 81.6 60 66.7
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-11 75.9 88 48.9
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 4.7e-08 64.3 47 68.1
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 31 90.3
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.2e-07 60.8 82 46.3
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 6.8e-07 60.5 31 80.6


User provided reference genes

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