Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39809 Davidia involucrata HOM05D003219 ORTHO05D018367 1.7e-151 539.3 267 100.0
Dinv40503 Davidia involucrata HOM05D003219 ORTHO05D005190 4.2e-118 428.3 271 81.5
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 8.9e-116 420.6 278 79.1
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 1.7e-111 406.4 270 76.7
vmacro23297 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 1.7e-111 406.4 270 76.7
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.5e-110 403.3 270 76.3
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 1.5e-110 403.3 271 77.1
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 9.5e-110 400.6 270 75.6
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 1.6e-109 399.8 271 75.3
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 4.7e-109 398.3 270 74.8
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 8.0e-109 397.5 271 74.9
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 8.9e-108 394.0 270 74.8
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 3.4e-107 392.1 271 75.3
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 3.4e-107 392.1 270 75.6
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 4.4e-107 391.7 271 73.4
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 5.8e-107 391.3 271 74.5
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 9.8e-107 390.6 269 75.8
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 2.2e-106 389.4 269 75.5
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 2.9e-106 389.0 285 70.5
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 3.7e-106 388.7 271 74.5
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 3.7e-106 388.7 285 70.5
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 4.9e-106 388.3 271 74.2
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 6.4e-106 387.9 269 75.1
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 6.4e-106 387.9 285 70.5
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 8.3e-106 387.5 270 74.4
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 1.1e-105 387.1 271 73.1
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 1.4e-105 386.7 270 74.4
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 1.4e-105 386.7 270 74.4
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 1.4e-105 386.7 269 75.1
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.4e-105 386.7 270 72.6
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 2.4e-105 386.0 271 73.1
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 5.4e-105 384.8 271 73.4
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 5.4e-105 384.8 285 70.5
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 7.0e-105 384.4 270 73.7
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 9.2e-105 384.0 270 73.7
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 9.2e-105 384.0 269 74.3
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.2e-104 383.6 271 73.1
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 1.2e-104 383.6 271 73.4
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 1.6e-104 383.3 271 73.1
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 1.6e-104 383.3 285 70.2
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 2.7e-104 382.5 269 74.7
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 3.5e-104 382.1 270 73.7
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 4.6e-104 381.7 271 72.7
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 4.6e-104 381.7 270 73.0
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 6.0e-104 381.3 269 73.6
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 7.8e-104 380.9 269 74.0
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 7.8e-104 380.9 270 73.3
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 7.8e-104 380.9 269 73.6
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 1.0e-103 380.6 269 73.2
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 1.3e-103 380.2 287 70.0
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 1.7e-103 379.8 271 72.7
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 5.0e-103 378.3 271 70.8
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 6.6e-103 377.9 271 71.6
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.1e-102 377.1 273 71.1
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 1.1e-102 377.1 261 75.5
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 1.5e-102 376.7 285 69.1
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 1.9e-102 376.3 269 73.2
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 5.6e-102 374.8 270 71.1
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 1.6e-101 373.2 271 70.5
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 1.6e-101 373.2 267 70.4
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 2.8e-101 372.5 272 70.2
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 3.6e-101 372.1 266 73.3
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 4.7e-101 371.7 271 70.1
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 6.2e-101 371.3 286 68.9
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 6.2e-101 371.3 267 70.4
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 8.1e-101 370.9 303 66.3
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 1.4e-100 370.2 264 72.7
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 2.3e-100 369.4 266 72.9
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.2e-99 367.1 274 70.8
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 7.5e-99 364.4 269 70.6
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 2.2e-98 362.8 332 61.4
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 6.4e-98 361.3 262 72.9
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 1.1e-97 360.5 271 70.8
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 1.9e-97 359.8 271 69.0
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 2.4e-97 359.4 271 69.4
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 7.1e-97 357.8 272 71.3
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 2.7e-96 355.9 271 67.2
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 2.7e-96 355.9 268 71.3
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 3.5e-96 355.5 264 71.2
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 4.6e-96 355.1 264 70.5
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 6.0e-96 354.8 271 67.9
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.8e-96 354.4 271 67.9
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 1.0e-95 354.0 260 70.4
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 3.0e-95 352.4 271 66.1
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 3.0e-95 352.4 271 67.2
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 5.1e-95 351.7 272 66.5
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 5.1e-95 351.7 272 66.5
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.1e-95 351.7 271 67.5
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 6.6e-95 351.3 272 66.5
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 6.6e-95 351.3 272 66.5
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 6.6e-95 351.3 272 66.5
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 8.6e-95 350.9 270 66.3
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 9.5e-94 347.4 271 66.1
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 1.2e-93 347.1 272 66.5
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 1.6e-93 346.7 281 66.5
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 4.7e-93 345.1 271 67.9
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 1.1e-92 344.0 271 64.9
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 1.8e-92 343.2 271 65.3
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 4.0e-92 342.0 269 64.7
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 3.4e-91 339.0 271 67.2
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 9.9e-91 337.4 272 67.3
SEGI_14928 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 9.9e-91 337.4 272 67.3
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 2.9e-90 335.9 283 65.4
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 3.7e-90 335.5 265 67.9
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 6.4e-90 334.7 287 62.0
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 1.4e-89 333.6 267 70.0
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 1.6e-88 330.1 272 62.9
Mapoly0119s0057 Marchantia polymorpha HOM05D003219 ORTHO05D005190 3.3e-86 322.4 271 62.7
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 1.4e-84 317.0 279 63.8
Zm00001eb110380 Zea mays HOM05D003219 ORTHO05D005190 1.5e-83 313.5 254 65.4
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 3.9e-79 298.9 272 59.2
BcaNung02109 Brassica carinata HOM05D003219 ORTHO05D018367 1.9e-78 296.6 271 60.9
Zm00001eb329230 Zea mays HOM05D003219 ORTHO05D005190 2.5e-78 296.2 252 63.1
Cpa.g.sc27.112 Carica papaya HOM05D003219 ORTHO05D005190 9.6e-78 294.3 271 59.0
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 3.6e-77 292.4 213 69.5
GSVIVG01006714001 Vitis vinifera HOM05D003219 ORTHO05D005190 3.6e-77 292.4 210 71.0
Nn2g13017 Nelumbo nucifera HOM05D003219 ORTHO05D005190 8.1e-77 291.2 271 59.4
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 5.3e-76 288.5 258 62.4
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 2.0e-75 286.6 212 70.8
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 7.6e-75 284.6 214 69.2
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 1.3e-74 283.9 269 58.4
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 4.2e-73 278.9 212 69.8
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.4e-73 278.5 256 60.9
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 6.6e-71 271.6 210 67.1
Actinidia05586 Actinidia chinensis HOM05D003219 ORTHO05D005190 8.7e-71 271.2 225 64.9
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 5.6e-70 268.5 255 57.6
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.3e-69 267.3 226 61.9
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 2.1e-69 266.5 255 57.3
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 6.2e-69 265.0 210 66.7
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 2.4e-68 263.1 208 66.3
Os07g0644300 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 8.4e-66 254.6 255 55.7
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 3.9e-63 245.7 210 60.5
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 4.8e-61 238.8 239 56.1
Sopen03g007850 Solanum pennellii HOM05D003219 ORTHO05D005190 8.1e-61 238.0 145 80.0
MBI11_g22684_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 9.0e-60 234.6 252 53.2
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 7.6e-59 231.5 203 59.6
Aqoxy7G03800 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 1.1e-57 227.6 209 56.0
PRCOL_00006288 Prasinoderma coloniale HOM05D003219 ORTHO05D005190 1.8e-55 220.3 209 55.0
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 1.9e-54 216.9 226 52.7
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.9e-54 216.9 226 52.7
C07p40150 Brassica napus HOM05D003219 ORTHO05D018367 1.1e-52 211.1 225 54.7
Cre12.g513500 Chlamydomonas reinhardtii HOM05D003219 ORTHO05D005190 2.0e-51 206.8 217 50.7
BolC7t44552H Brassica oleracea HOM05D003219 ORTHO05D018367 1.6e-48 197.2 225 51.6
Os06g0235800 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 1.0e-47 194.5 242 44.2
Aqoxy7G04117 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 8.7e-47 191.4 165 60.6
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 1.6e-40 170.6 206 45.6
BcaNung05343 Brassica carinata HOM05D003219 ORTHO05D005190 2.7e-40 169.9 207 45.4
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 6.1e-40 168.7 206 45.6
Haze_26834 Corylus avellana HOM05D003219 ORTHO05D005190 7.9e-40 168.3 216 43.1
MCO01G142 Micromonas commoda HOM05D003219 ORTHO05D005190 3.9e-39 166.0 213 42.7
Cfa023613 Carpinus fangiana HOM05D003219 ORTHO05D005190 8.8e-39 164.9 253 39.5
FAN21G0395 Fragaria x ananassa HOM05D003219 ORTHO05D005190 4.8e-37 159.1 151 57.6
Thecc.01G128700 Theobroma cacao HOM05D003219 ORTHO05D024673 1.4e-36 157.5 127 65.4
Sabra04G0021600 Salix brachista HOM05D003219 ORTHO05D005190 2.9e-26 123.2 128 51.6
BcaC05g27821 Brassica carinata HOM05D003219 ORTHO05D020042 1.2e-24 117.9 141 52.5
C05p38210 Brassica napus HOM05D003219 ORTHO05D020042 1.2e-24 117.9 141 52.5
BolC5t32549H Brassica oleracea HOM05D003219 ORTHO05D020042 1.2e-24 117.9 141 52.5
Actinidia01932 Actinidia chinensis HOM05D003219 ORTHO05D005190 1.0e-23 114.8 91 68.1
RcHm_v2.0_Chr5g0006191 Rosa chinensis HOM05D003219 ORTHO05D005190 6.7e-23 112.1 107 54.2
A10p11140 Brassica napus HOM05D003219 ORTHO05D020042 6.3e-21 105.5 84 65.5
Aqoxy7G01388 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 1.7e-18 97.4 88 59.1
A06p38060 Brassica napus HOM05D003219 ORTHO05D024673 1.1e-17 94.7 103 47.6
BraA06t26721Z Brassica rapa HOM05D003219 ORTHO05D024673 1.1e-17 94.7 103 47.6
Potri.011G043812 Populus trichocarpa HOM05D003219 ORTHO05D005190 8.0e-16 88.6 60 73.3
C04p20450 Brassica napus HOM05D011137 ORTHO05D020042 3.0e-15 86.7 207 33.3
FAN21G3557 Fragaria x ananassa HOM05D003219 ORTHO05D005190 4.0e-15 86.3 51 78.4
ATR0753G021 Amborella trichopoda HOM05D003219 ORTHO05D031110 9.8e-14 81.6 59 66.1
RcHm_v2.0_Chr5g0006181 Rosa chinensis HOM05D003219 ORTHO05D018367 1.1e-12 78.2 104 44.2
Medtr2g031710 Medicago truncatula HOM05D003219 ORTHO05D024673 3.1e-12 76.6 82 52.4
Os01g0686600 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 3.1e-12 76.6 82 50.0
AUR62042994 Chenopodium quinoa HOM05D003219 ORTHO05D018367 1.7e-10 70.9 106 39.6
BcaB04g19106 Brassica carinata HOM05D003219 ORTHO05D032346 5.5e-09 65.9 106 40.6
BcaC02g10920 Brassica carinata HOM05D003219 ORTHO05D027510 9.4e-09 65.1 101 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1014 Anthoceros agrestis HOM05D003219 ORTHO05D018367 4.7e-08 62.8 102 39.2
BraA10t43207Z Brassica rapa HOM05D011137 ORTHO05D020042 6.1e-08 62.4 47 59.6
AagrBONN_evm.TU.Sc2ySwM_344.296 Anthoceros agrestis HOM05D003219 ORTHO05D074497 1.0e-07 61.6 67 52.2
Lsat_1_v5_gn_3_9820 Lactuca sativa HOM05D003219 ORTHO05D031110 1.0e-07 61.6 59 57.6
Lsat_1_v5_gn_1_46641 Lactuca sativa HOM05D003219 ORTHO05D031110 1.4e-07 61.2 59 57.6
Sp1g37090 Schrenkiella parvula HOM05D003219 ORTHO05D371541 5.7e-06 55.8 44 61.4


User provided reference genes

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