Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2741.1 1382 100.0
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2614.0 1383 94.2
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2583.1 1382 92.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2579.7 1385 92.3
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2579.7 1383 92.2
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2574.3 1382 91.9
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2568.1 1385 91.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2563.1 1383 91.5
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2552.7 1382 91.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2552.3 1383 91.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2552.3 1382 91.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2550.4 1398 91.1
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2547.3 1383 91.0
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1398 90.4
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1383 90.7
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2539.2 1385 90.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1383 90.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1383 90.3
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1382 90.6
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2533.4 1388 90.6
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2533.4 1382 90.2
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2533.1 1386 90.5
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1383 90.6
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1382 90.7
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1384 90.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1382 90.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1388 90.5
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1383 90.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2528.1 1382 90.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1383 90.1
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1382 90.2
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2524.2 1382 90.2
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1383 89.8
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2522.7 1382 90.8
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2520.3 1382 90.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1385 89.6
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1382 89.9
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1383 90.1
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1382 89.7
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1384 90.0
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1383 89.2
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1382 89.7
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2511.9 1384 90.1
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1383 89.2
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1382 89.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2509.2 1384 89.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2509.2 1385 89.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2508.8 1384 89.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2508.0 1382 89.4
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2508.0 1382 89.4
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1383 89.9
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1382 89.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1383 90.2
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1386 89.2
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1384 89.5
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1409 87.9
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1384 89.0
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1384 88.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1384 88.9
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2489.5 1382 89.2
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1384 88.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1393 88.5
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2478.4 1384 88.7
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1384 88.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1382 89.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2476.0 1384 88.4
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1382 89.1
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.4
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2474.9 1446 85.5
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1383 88.3
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1384 87.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2466.4 1335 91.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1385 87.9
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2453.7 1385 87.7
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2453.3 1383 88.1
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2452.6 1355 89.4
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1384 86.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1384 87.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1384 86.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1384 86.6
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2428.7 1383 86.6
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2427.5 1384 86.6
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2423.7 1384 86.4
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1385 86.4
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1384 86.4
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2419.8 1384 87.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1384 86.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1384 86.2
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2407.1 1384 85.8
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2407.1 1384 85.8
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2405.6 1384 85.8
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2395.9 1382 86.8
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2366.3 1385 85.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2363.2 1383 85.3
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2348.5 1383 84.7
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2344.7 1258 92.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2344.7 1408 83.7
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1354 84.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2322.0 1379 82.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2288.1 1258 90.2
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2264.2 1261 88.9
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2215.7 1339 83.1
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2203.3 1331 80.7
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2201.0 1333 81.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1334 80.1
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1331 79.7
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1331 79.7
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2164.8 1369 77.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2035.0 1120 89.6
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2010.7 1108 89.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2001.5 1380 75.9
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1927.1 1400 73.4
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1881.7 1332 68.9
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1867.8 1334 69.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1743.4 1382 67.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1689.9 913 91.2
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1650.6 898 91.2
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1523.5 809 93.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1520.0 808 92.6
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1161.0 690 84.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1133.2 675 83.4
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1078.2 669 81.8
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 4.5e-296 1021.9 571 86.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.9e-262 910.2 588 78.2
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.3e-262 909.4 1199 44.0
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 5.0e-247 859.0 470 90.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.1e-244 851.3 470 90.0
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 9.2e-241 838.2 471 88.3
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.4e-220 770.4 471 81.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 7.6e-203 712.2 398 87.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.0e-171 607.8 1375 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.0e-155 554.7 1447 30.3
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 7.3e-105 386.7 807 33.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.8e-87 328.9 175 91.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.3e-64 253.1 147 84.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 2.1e-59 235.7 123 91.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.6e-46 193.0 107 88.8
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 3.4e-41 175.3 197 52.8
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 9.2e-31 140.6 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.5e-28 132.5 99 70.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.3e-26 125.9 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.3e-20 105.5 60 86.7


User provided reference genes

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