Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 5.6e-130 467.6 237 100.0
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 3.3e-98 362.1 237 78.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.3e-97 360.1 239 79.9
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.3e-94 350.1 237 76.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 5.7e-90 334.7 202 85.6
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.9e-88 327.8 228 75.0
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.5e-87 325.1 224 73.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.8e-86 322.0 237 70.9
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 8.5e-86 320.9 223 71.3
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.7e-83 311.2 231 73.2
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 9.7e-82 307.4 237 67.9
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.8e-81 305.1 234 68.4
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 8.2e-81 304.3 234 66.7
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.1e-80 303.9 235 68.1
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 5.3e-80 301.6 237 63.3
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.9e-79 298.1 235 67.2
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.2e-78 296.2 235 65.5
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 3.8e-78 295.4 235 66.8
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.5e-78 294.7 234 65.8
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.5e-78 294.7 234 65.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 8.5e-78 294.3 234 65.8
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-77 293.5 234 65.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.2e-77 292.0 237 64.6
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 5.5e-77 291.6 237 65.0
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 5.5e-77 291.6 235 63.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.6e-76 290.0 231 63.6
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 8.0e-76 287.7 229 65.9
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.0e-75 287.3 232 65.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 3.0e-75 285.8 237 61.6
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 6.7e-75 284.6 237 64.1
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 8.8e-75 284.3 192 71.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 8.8e-75 284.3 237 61.6
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.1e-74 283.9 237 62.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.1e-74 283.9 234 64.5
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 3.3e-74 282.3 234 62.8
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 9.7e-74 280.8 201 70.6
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 9.7e-74 280.8 229 61.6
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.3e-73 280.4 229 60.7
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.7e-73 280.0 231 61.5
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.7e-73 280.0 232 62.1
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.2e-73 279.6 198 70.2
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.8e-73 279.3 237 59.5
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 4.8e-73 278.5 229 62.9
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 6.3e-73 278.1 196 65.8
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.1e-72 275.8 237 62.0
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.1e-72 275.8 237 63.3
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.6e-71 273.5 232 60.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.6e-71 272.7 211 65.4
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 3.5e-71 272.3 196 64.3
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.5e-71 271.9 238 63.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 7.7e-71 271.2 231 60.6
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.7e-70 270.0 237 59.9
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.9e-70 269.2 192 66.7
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.9e-70 269.2 237 60.3
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 5.0e-70 268.5 233 59.7
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.1e-69 267.3 237 58.2
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.2e-69 265.4 233 57.9
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 7.2e-69 264.6 197 63.5
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 7.2e-69 264.6 189 68.3
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.2e-68 263.8 237 58.2
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-68 263.5 238 59.7
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.6e-68 263.5 237 57.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.1e-68 263.1 238 61.3
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.1e-68 263.1 231 58.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 4.7e-68 261.9 237 58.2
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.1e-68 261.5 237 58.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 8.0e-68 261.2 238 60.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.4e-67 260.4 182 68.7
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.3e-67 259.6 233 59.7
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.0e-67 259.2 234 57.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 3.0e-67 259.2 237 58.6
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.8e-67 258.1 202 67.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 5.7e-66 255.0 234 56.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 9.7e-66 254.2 234 56.0
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.2e-65 253.1 194 62.4
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 6.3e-65 251.5 237 59.1
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 6.3e-65 251.5 200 65.5
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.4e-64 250.4 234 55.1
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.1e-64 249.2 238 57.1
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.1e-64 248.8 194 61.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 7.0e-64 248.1 208 58.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 7.0e-64 248.1 234 56.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 9.1e-64 247.7 194 60.3
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.0e-63 246.5 235 57.4
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 7.7e-63 244.6 194 58.8
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 7.7e-63 244.6 194 59.3
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.0e-62 244.2 256 57.0
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.3e-62 243.8 196 58.7
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.7e-62 243.4 235 56.2
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 3.8e-62 242.3 194 57.7
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.0e-62 241.9 176 67.6
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 6.5e-62 241.5 195 57.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 6.5e-62 241.5 195 57.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 8.5e-62 241.1 232 56.9
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.5e-61 240.4 238 54.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 3.2e-61 239.2 195 57.4
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 4.2e-61 238.8 259 50.6
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 7.2e-61 238.0 194 57.2
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 261 49.4
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.7e-60 236.1 188 58.0
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.7e-60 235.3 188 58.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.8e-59 233.4 248 52.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.8e-59 233.4 237 54.4
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 5.2e-59 231.9 240 52.1
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 6.8e-59 231.5 233 55.8
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-58 229.9 223 52.0
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.4e-56 223.8 240 49.2
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.8e-56 223.4 242 52.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 5.4e-56 221.9 196 54.6
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 7.0e-56 221.5 242 52.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.0e-56 221.5 242 52.1
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.2e-53 212.2 260 48.1
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 8.0e-52 208.0 124 80.6
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.0e-51 207.6 182 58.2
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.0e-51 207.6 231 52.4
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.4e-51 207.2 161 62.1
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-51 206.8 142 71.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.0e-51 206.1 180 56.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 4.0e-51 205.7 227 51.5
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.9e-51 204.5 180 55.0
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.1e-48 197.6 196 52.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 7.8e-47 191.4 159 57.9
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 3.3e-45 186.0 316 41.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 5.2e-43 178.7 230 43.5
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.7e-41 172.6 131 64.1
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-40 170.6 239 45.6
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 4.3e-37 159.1 259 39.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.6e-36 156.0 154 52.6
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.8e-35 151.8 216 43.1
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 6.0e-31 138.7 209 39.7
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.6e-28 130.6 116 54.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.7e-28 129.0 76 82.9
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.1e-27 127.9 183 39.9
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.1e-27 127.9 184 40.2
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.8e-27 127.1 179 43.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 2.0e-26 123.6 218 37.2
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 3.7e-25 119.4 143 44.8
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.2e-16 89.7 88 48.9
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.6e-15 87.4 95 46.3
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.7e-14 84.0 78 60.3
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.3e-13 79.3 78 57.7
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.1e-12 77.0 72 51.4
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 5.8e-10 68.9 165 32.1
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 3.8e-09 66.2 182 28.6
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 4.9e-09 65.9 51 66.7
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 1.7e-06 57.4 36 75.0
SEGI_28115 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 8.7e-06 55.1 101 39.6


User provided reference genes

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