Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 2.6e-107 392.1 207 100.0
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 1.4e-79 300.1 189 86.8
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 4.4e-70 268.5 184 81.5
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 4.8e-69 265.0 182 76.9
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 2.2e-66 256.1 192 70.8
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 1.5e-65 253.4 194 73.7
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.9e-65 253.1 185 77.8
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 4.2e-65 251.9 192 73.4
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 9.4e-65 250.8 205 71.7
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 9.4e-65 250.8 203 70.4
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 9.4e-65 250.8 194 73.7
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 9.4e-65 250.8 182 74.2
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 2.1e-64 249.6 188 71.3
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 2.7e-64 249.2 191 74.3
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 4.7e-64 248.4 195 71.8
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 6.1e-64 248.1 196 72.4
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 1.0e-63 247.3 193 73.1
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 1.5e-62 243.4 189 73.5
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 4.4e-62 241.9 194 71.1
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 4.4e-62 241.9 183 73.2
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.7e-61 240.0 192 73.4
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 1.7e-61 240.0 190 71.6
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 4.8e-61 238.4 186 72.0
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 1.1e-60 237.3 192 70.3
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 4.1e-60 235.3 192 70.8
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.0e-59 233.0 181 72.4
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 2.2e-58 229.6 195 65.1
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 3.8e-58 228.8 183 71.0
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 5.0e-58 228.4 195 68.2
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.1e-57 227.3 185 70.8
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 1.1e-57 227.3 195 68.2
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 1.1e-57 227.3 185 67.0
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.5e-57 226.1 192 68.8
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 4.2e-57 225.3 192 69.3
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 7.2e-57 224.6 181 69.1
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 2.7e-56 222.6 193 67.9
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.0e-56 221.1 192 67.7
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 8.0e-56 221.1 192 67.7
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.0e-55 220.7 192 68.8
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.8e-55 219.9 185 68.1
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.8e-55 217.6 185 67.6
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.5e-54 216.9 185 67.6
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 2.6e-54 216.1 190 66.8
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 4.4e-54 215.3 195 66.7
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 5.7e-54 214.9 181 70.2
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 9.8e-54 214.2 190 64.2
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 1.7e-53 213.4 183 66.1
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.8e-53 212.6 179 68.7
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 2.8e-53 212.6 179 72.1
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 4.8e-53 211.8 190 65.8
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 6.3e-53 211.5 192 67.7
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 8.3e-53 211.1 185 65.4
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 2.4e-52 209.5 185 65.4
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 3.1e-52 209.1 174 69.5
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 7.0e-52 208.0 196 65.3
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 9.1e-52 207.6 195 63.6
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 2.7e-51 206.1 183 66.7
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.7e-51 206.1 185 65.4
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 3.5e-51 205.7 192 63.5
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 4.5e-51 205.3 214 58.9
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 1.3e-50 203.8 190 63.2
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 3.8e-50 202.2 183 63.4
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 8.6e-50 201.1 190 61.6
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 8.6e-50 201.1 184 64.7
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.1e-49 200.7 193 62.2
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 1.1e-49 200.7 190 60.5
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.5e-49 199.5 194 62.4
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 2.5e-49 199.5 183 66.1
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 3.3e-49 199.1 181 65.2
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 3.3e-49 199.1 181 64.1
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 3.3e-49 199.1 180 62.2
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 4.2e-49 198.7 184 63.6
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 9.5e-49 197.6 190 61.1
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.2e-48 197.2 194 61.9
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 4.7e-48 195.3 213 56.8
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 4.7e-48 195.3 185 62.2
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.0e-47 194.1 191 59.7
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.0e-47 194.1 183 62.8
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 1.0e-47 194.1 192 63.0
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 4.0e-47 192.2 170 66.5
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 1.5e-46 190.3 185 63.2
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 2.0e-46 189.9 185 60.5
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 2.0e-46 189.9 173 63.6
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 4.4e-46 188.7 191 59.7
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 5.7e-46 188.3 183 66.1
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 5.7e-46 188.3 191 58.1
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 7.5e-46 188.0 183 66.1
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.3e-45 187.2 170 66.5
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 1.7e-45 186.8 194 61.9
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 2.2e-45 186.4 189 60.8
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.1e-44 184.1 194 57.2
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 2.4e-44 183.0 191 58.6
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 7.0e-44 181.4 153 69.9
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 7.0e-44 181.4 184 60.3
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 9.2e-44 181.0 186 61.3
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 1.7e-42 176.8 230 50.9
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 2.3e-42 176.4 192 59.4
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 1.1e-41 174.1 192 59.4
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 8.0e-40 167.9 191 56.5
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 6.8e-39 164.9 191 53.9
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 2.0e-38 163.3 191 53.4
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 7.5e-38 161.4 192 55.7
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 4.9e-37 158.7 179 58.1
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 4.9e-37 158.7 169 58.6
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 1.9e-36 156.8 189 55.0
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 5.4e-36 155.2 189 54.0
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 7.0e-36 154.8 175 57.1
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 1.6e-35 153.7 185 55.7
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 6.0e-35 151.8 180 52.2
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 7.8e-35 151.4 179 57.0
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.7e-34 150.2 192 50.0
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 3.9e-34 149.1 217 50.2
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 6.6e-34 148.3 192 50.0
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 1.5e-33 147.1 171 57.9
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.9e-33 146.7 191 55.0
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 9.5e-33 144.4 178 56.7
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 6.8e-31 138.3 194 50.0
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 4.4e-30 135.6 188 51.1
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 5.8e-30 135.2 173 52.6
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 9.8e-30 134.4 189 49.2
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.3e-29 134.0 190 54.7
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 1.7e-29 133.7 183 50.8
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 2.2e-29 133.3 194 49.5
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 3.7e-29 132.5 202 47.0
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 4.9e-29 132.1 187 46.5
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.9e-28 130.2 183 47.0
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.9e-28 130.2 183 47.0
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 4.6e-27 125.6 181 51.4
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 4.3e-25 119.0 188 47.3
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 8.1e-24 114.8 177 50.3
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 8.9e-23 111.3 194 47.4
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 8.9e-23 111.3 194 47.4
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 2.6e-22 109.8 208 45.2
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 9.9e-22 107.8 181 49.7
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 3.7e-21 105.9 176 48.3
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 3.7e-21 105.9 176 48.3
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 3.7e-21 105.9 176 48.3
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 6.4e-21 105.1 202 44.1
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 6.4e-21 105.1 202 44.1
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 8.3e-21 104.8 178 47.8
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 9.2e-20 101.3 173 45.7
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 9.2e-20 101.3 90 63.3
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 2.1e-19 100.1 117 58.1
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 6.0e-19 98.6 192 44.3
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 7.8e-19 98.2 199 42.7
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 1.7e-18 97.1 194 45.4
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 1.7e-18 97.1 194 43.8
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 3.0e-18 96.3 193 44.0
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 1.1e-17 94.4 157 47.8
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 9.5e-17 91.3 75 65.3
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 3.1e-15 86.3 195 41.0
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 4.0e-15 85.9 94 59.6
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 3.2e-12 76.3 192 39.6
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 7.1e-12 75.1 196 39.3
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 1.1e-09 67.8 103 49.5
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 6.2e-08 62.0 171 37.4
SEGI_27290 Sequoiadendron giganteum HOM05D004047 ORTHO05D037350 1.5e-06 57.4 191 31.9
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 4.4e-06 55.8 47 61.7


User provided reference genes

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