Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 6.6e-73 278.1 247 100.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.5e-26 122.9 246 66.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.3e-24 116.3 208 65.4
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.3e-24 116.3 208 65.4
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.4e-22 110.9 214 63.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.4e-22 110.2 207 63.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.4e-22 110.2 206 63.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.1e-22 109.8 207 65.2
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.1e-22 109.8 214 62.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 6.9e-22 108.6 214 62.6
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 6.9e-22 108.6 210 62.4
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.0e-21 107.1 214 61.7
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.0e-21 107.1 239 62.3
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 3.4e-21 106.3 187 68.4
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 4.5e-21 105.9 212 63.2
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 5.8e-21 105.5 217 59.9
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 5.8e-21 105.5 210 62.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.0e-20 104.8 216 61.1
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.3e-20 104.4 213 61.5
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.2e-20 103.6 214 62.6
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 2.2e-20 103.6 214 61.2
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.2e-20 103.6 69 89.9
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.9e-20 103.2 213 63.8
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 3.8e-20 102.8 214 61.2
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 3.8e-20 102.8 216 60.6
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.9e-20 102.4 210 61.4
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 8.4e-20 101.7 210 63.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.1e-19 101.3 216 62.5
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.9e-19 100.5 217 59.9
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.2e-19 99.8 215 59.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 4.2e-19 99.4 214 60.7
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 5.5e-19 99.0 213 60.6
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 7.1e-19 98.6 50 88.0
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 9.3e-19 98.2 217 49.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.2e-18 97.8 181 54.1
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.8e-17 94.0 222 58.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.3e-17 93.6 196 34.2
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.3e-17 93.6 50 82.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.0e-17 93.2 69 85.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.0e-17 93.2 180 52.2
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.0e-17 93.2 212 61.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 5.1e-17 92.4 50 82.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.1e-17 92.4 50 80.0
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.1e-17 92.4 171 60.2
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 8.7e-17 91.7 50 82.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 8.7e-17 91.7 50 78.0
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.9e-16 90.5 204 59.8
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.3e-16 89.7 50 78.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.3e-16 89.7 50 80.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.3e-16 89.7 50 80.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 4.3e-16 89.4 50 80.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.3e-16 89.4 50 78.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 5.7e-16 89.0 50 74.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 7.4e-16 88.6 50 76.0
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 7.4e-16 88.6 216 58.3
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 9.6e-16 88.2 220 57.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.3e-15 87.8 50 80.0
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-15 87.4 209 61.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.6e-15 87.4 50 80.0
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.1e-15 87.0 211 59.7
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.1e-15 87.0 50 76.0
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.1e-15 87.0 48 79.2
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 2.8e-15 86.7 50 74.0
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 2.8e-15 86.7 50 76.0
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.8e-15 86.7 203 61.6
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.8e-15 86.7 188 66.5
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 2.8e-15 86.7 50 78.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 4.8e-15 85.9 216 58.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 4.8e-15 85.9 50 76.0
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 6.3e-15 85.5 48 75.0
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.1e-14 84.7 52 75.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-14 84.3 71 69.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.4e-14 84.3 52 75.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.8e-14 84.0 49 75.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.8e-14 84.0 71 77.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.8e-14 84.0 71 77.5
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.8e-14 84.0 49 75.5
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.8e-14 84.0 53 73.6
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.8e-14 84.0 53 73.6
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.4e-14 83.6 50 78.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 4.1e-14 82.8 50 76.0
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 6.9e-14 82.0 52 73.1
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.0e-14 81.6 44 79.5
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.0e-13 80.5 56 71.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.6e-13 80.1 53 69.8
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-13 80.1 53 69.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-13 80.1 53 69.8
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-13 80.1 53 69.8
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-13 80.1 53 69.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.4e-13 79.7 66 81.8
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.5e-13 79.3 51 72.5
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.6e-13 78.6 47 74.5
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 7.6e-13 78.6 56 67.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.0e-12 78.2 50 70.0
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.0e-12 78.2 50 70.0
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.0e-12 78.2 50 70.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.0e-12 78.2 49 69.4
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.3e-12 77.8 49 75.5
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 2.2e-12 77.0 50 70.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.9e-12 76.6 50 66.0
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 3.8e-12 76.3 47 76.6
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.5e-12 75.5 49 69.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.5e-12 75.5 49 69.4
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-11 74.7 50 68.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.5e-11 73.6 51 68.6
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.2e-11 73.2 51 68.6
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 5.5e-11 72.4 211 59.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.5e-11 72.4 58 60.3
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 7.2e-11 72.0 297 46.5
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.6e-10 70.9 59 61.0
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.1e-10 70.5 51 68.6
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.5e-10 69.7 195 60.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 3.5e-10 69.7 49 65.3
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.5e-10 69.7 49 65.3
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.6e-10 69.3 51 68.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 6.1e-10 68.9 155 65.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.0e-09 68.2 185 61.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-09 68.2 51 66.7
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.0e-09 66.6 56 62.5
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-09 66.6 48 66.7
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-09 66.6 48 66.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.0e-09 66.6 51 64.7
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.9e-09 66.2 50 66.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 6.7e-09 65.5 51 64.7
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.7e-09 65.1 51 66.7
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.7e-09 65.1 51 66.7
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 8.7e-09 65.1 48 66.7
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 1.1e-08 64.7 50 66.0
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.1e-08 64.7 51 64.7
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.9e-08 63.9 51 62.7
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.9e-08 63.9 51 64.7
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.9e-08 63.9 50 62.0
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.9e-08 63.9 51 62.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.3e-08 62.8 46 60.9
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 4.3e-08 62.8 226 54.0
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 5.7e-08 62.4 183 61.7
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.7e-08 62.4 51 62.7
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.3e-07 61.2 32 87.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 1.6e-07 60.8 50 64.0
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.6e-07 60.8 50 64.0
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.6e-07 60.8 50 64.0
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.6e-07 60.8 50 64.0
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.8e-07 60.1 38 73.7
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 2.8e-07 60.1 50 64.0
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 2.8e-07 60.1 52 59.6
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 3.7e-07 59.7 50 60.0
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.3e-07 58.9 50 62.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.3e-07 58.9 50 60.0
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.2e-07 58.5 198 57.6
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.8e-06 57.4 25 88.0
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.4e-06 57.0 38 68.4
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 3.1e-06 56.6 42 57.1
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.1e-06 56.6 35 71.4
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 9.0e-06 55.1 40 65.0


User provided reference genes

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